View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_78 (Length: 239)

Name: NF3296_low_78
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_78
NF3296_low_78
[»] chr5 (40 HSPs)
chr5 (1-220)||(35083112-35083324)
chr5 (8-95)||(28625472-28625558)
chr5 (8-82)||(12467269-12467343)
chr5 (27-97)||(42706786-42706856)
chr5 (8-97)||(41534613-41534701)
chr5 (25-97)||(1943000-1943072)
chr5 (20-95)||(6144730-6144805)
chr5 (8-83)||(13060610-13060684)
chr5 (20-97)||(3977467-3977542)
chr5 (14-88)||(13625534-13625608)
chr5 (25-95)||(40696993-40697063)
chr5 (8-97)||(40452486-40452574)
chr5 (25-97)||(1868836-1868908)
chr5 (25-85)||(22201960-22202020)
chr5 (25-97)||(41059813-41059885)
chr5 (8-83)||(1473360-1473434)
chr5 (20-83)||(12987033-12987096)
chr5 (20-85)||(10537238-10537303)
chr5 (20-85)||(24030217-24030282)
chr5 (25-82)||(29922213-29922270)
chr5 (20-85)||(42852024-42852089)
chr5 (47-95)||(6125279-6125327)
chr5 (25-85)||(17128280-17128340)
chr5 (20-91)||(17657238-17657309)
chr5 (8-97)||(41419494-41419579)
chr5 (25-84)||(43268645-43268704)
chr5 (50-95)||(10274266-10274311)
chr5 (17-85)||(1576633-1576699)
chr5 (17-85)||(1608116-1608182)
chr5 (25-85)||(2878700-2878760)
chr5 (27-83)||(43010639-43010695)
chr5 (7-85)||(14243825-14243903)
chr5 (59-97)||(28357256-28357294)
chr5 (8-95)||(31637102-31637184)
chr5 (25-82)||(2670080-2670137)
chr5 (57-90)||(7364249-7364282)
chr5 (59-96)||(43268570-43268607)
chr5 (51-83)||(6008329-6008361)
chr5 (57-85)||(13625465-13625493)
chr5 (8-91)||(35536838-35536923)
[»] chr4 (34 HSPs)
chr4 (8-97)||(48591432-48591520)
chr4 (8-97)||(52274128-52274216)
chr4 (14-97)||(7148762-7148844)
chr4 (8-95)||(36740896-36740982)
chr4 (20-90)||(896967-897037)
chr4 (8-97)||(825672-825760)
chr4 (19-95)||(28074357-28074433)
chr4 (20-95)||(488403-488478)
chr4 (25-85)||(3564222-3564282)
chr4 (8-85)||(35124389-35124465)
chr4 (25-85)||(23297440-23297500)
chr4 (8-96)||(23335633-23335720)
chr4 (14-85)||(948074-948145)
chr4 (14-85)||(12495658-12495730)
chr4 (20-83)||(27368171-27368234)
chr4 (20-95)||(39932773-39932848)
chr4 (8-82)||(29877644-29877717)
chr4 (19-65)||(29997328-29997374)
chr4 (13-83)||(43699496-43699565)
chr4 (51-95)||(28663420-28663464)
chr4 (20-83)||(212967-213029)
chr4 (47-82)||(29996685-29996720)
chr4 (8-83)||(46704278-46704351)
chr4 (20-90)||(8601198-8601268)
chr4 (51-97)||(54412097-54412143)
chr4 (59-96)||(2141632-2141669)
chr4 (25-82)||(18424301-18424358)
chr4 (20-85)||(40699358-40699423)
chr4 (20-85)||(41228905-41228970)
chr4 (16-84)||(3966733-3966799)
chr4 (25-85)||(8130490-8130550)
chr4 (25-85)||(11298595-11298655)
chr4 (25-85)||(15179820-15179879)
chr4 (20-64)||(17222852-17222896)
[»] chr8 (25 HSPs)
chr8 (25-97)||(28879048-28879120)
chr8 (25-90)||(32975684-32975749)
chr8 (8-97)||(35453400-35453488)
chr8 (8-95)||(34286572-34286657)
chr8 (15-95)||(32213036-32213116)
chr8 (20-86)||(38895660-38895726)
chr8 (8-97)||(10298934-10299022)
chr8 (20-94)||(24350538-24350612)
chr8 (25-91)||(13265480-13265546)
chr8 (6-82)||(14709542-14709617)
chr8 (47-83)||(19327871-19327907)
chr8 (25-85)||(32131442-32131502)
chr8 (20-72)||(35168460-35168512)
chr8 (59-90)||(9130957-9130988)
chr8 (51-90)||(41145448-41145487)
chr8 (59-97)||(18396926-18396964)
chr8 (27-85)||(29243090-29243147)
chr8 (19-85)||(35285930-35285996)
chr8 (42-91)||(9131169-9131218)
chr8 (20-85)||(38338870-38338934)
chr8 (20-85)||(42102109-42102173)
chr8 (20-85)||(42363336-42363400)
chr8 (28-88)||(2289913-2289973)
chr8 (57-85)||(16972301-16972329)
chr8 (20-96)||(28280700-28280776)
[»] chr1 (41 HSPs)
chr1 (8-97)||(48819289-48819377)
chr1 (8-95)||(6337764-6337850)
chr1 (8-99)||(37329420-37329510)
chr1 (18-95)||(31378768-31378845)
chr1 (20-95)||(15515366-15515441)
chr1 (8-95)||(45267457-45267544)
chr1 (20-97)||(1005330-1005407)
chr1 (20-85)||(4068117-4068182)
chr1 (8-85)||(18327526-18327602)
chr1 (17-97)||(26936849-26936928)
chr1 (8-91)||(3069862-3069944)
chr1 (8-94)||(26988136-26988226)
chr1 (25-88)||(36423005-36423068)
chr1 (51-97)||(28870214-28870260)
chr1 (25-83)||(35897647-35897705)
chr1 (8-97)||(16888974-16889061)
chr1 (20-80)||(13038954-13039014)
chr1 (8-83)||(35590134-35590208)
chr1 (25-82)||(10365176-10365233)
chr1 (20-85)||(28122618-28122683)
chr1 (20-81)||(39941447-39941508)
chr1 (8-90)||(41196718-41196795)
chr1 (7-83)||(10082254-10082330)
chr1 (31-85)||(391170-391225)
chr1 (25-96)||(8410140-8410210)
chr1 (42-85)||(22593448-22593491)
chr1 (25-100)||(51409731-51409805)
chr1 (19-85)||(1565400-1565466)
chr1 (7-57)||(23544821-23544870)
chr1 (20-86)||(25485749-25485815)
chr1 (20-82)||(37712073-37712134)
chr1 (67-97)||(38781063-38781093)
chr1 (26-79)||(10850096-10850149)
chr1 (20-85)||(17814193-17814257)
chr1 (20-85)||(20169266-20169331)
chr1 (20-85)||(32497291-32497355)
chr1 (57-90)||(36259231-36259264)
chr1 (20-81)||(39941516-39941577)
chr1 (57-85)||(4068228-4068256)
chr1 (57-85)||(13039060-13039088)
chr1 (8-85)||(28690004-28690082)
[»] chr3 (30 HSPs)
chr3 (8-95)||(43079942-43080028)
chr3 (8-97)||(52021236-52021325)
chr3 (15-83)||(40581091-40581159)
chr3 (20-85)||(22809212-22809278)
chr3 (20-90)||(52421160-52421230)
chr3 (20-82)||(21296771-21296833)
chr3 (20-77)||(3845865-3845922)
chr3 (20-97)||(3870245-3870322)
chr3 (20-97)||(48597886-48597963)
chr3 (20-85)||(51409395-51409460)
chr3 (8-75)||(29270373-29270439)
chr3 (20-91)||(40240596-40240667)
chr3 (20-83)||(53218059-53218122)
chr3 (60-97)||(23555523-23555560)
chr3 (20-97)||(45331314-45331391)
chr3 (9-80)||(10272129-10272197)
chr3 (54-90)||(36638953-36638989)
chr3 (27-95)||(37601053-37601121)
chr3 (8-71)||(23816179-23816240)
chr3 (25-79)||(10521162-10521216)
chr3 (25-83)||(10667402-10667460)
chr3 (25-83)||(27769650-27769707)
chr3 (59-97)||(29270465-29270503)
chr3 (14-76)||(34707727-34707788)
chr3 (20-85)||(2086710-2086775)
chr3 (66-95)||(52421071-52421100)
chr3 (19-83)||(4257320-4257383)
chr3 (47-83)||(24842153-24842189)
chr3 (20-88)||(32900747-32900815)
chr3 (59-95)||(52895431-52895467)
[»] chr7 (22 HSPs)
chr7 (8-97)||(47511033-47511121)
chr7 (8-97)||(29378635-29378723)
chr7 (20-85)||(44613492-44613557)
chr7 (50-97)||(17944517-17944564)
chr7 (42-96)||(41094138-41094192)
chr7 (14-95)||(1054081-1054162)
chr7 (48-93)||(33288146-33288191)
chr7 (27-83)||(34922935-34922991)
chr7 (25-85)||(40629441-40629500)
chr7 (23-79)||(48895304-48895360)
chr7 (8-83)||(30181554-30181628)
chr7 (25-83)||(29390574-29390632)
chr7 (28-85)||(38372560-38372617)
chr7 (20-85)||(41037755-41037819)
chr7 (18-82)||(41094223-41094287)
chr7 (27-83)||(41677378-41677434)
chr7 (49-89)||(47648536-47648576)
chr7 (59-94)||(33204878-33204913)
chr7 (18-85)||(14593150-14593219)
chr7 (57-95)||(29778443-29778481)
chr7 (25-82)||(48021671-48021728)
chr7 (20-79)||(14691318-14691378)
[»] scaffold0332 (1 HSPs)
scaffold0332 (25-100)||(14770-14845)
[»] chr6 (28 HSPs)
chr6 (20-97)||(2034248-2034325)
chr6 (7-97)||(10755287-10755376)
chr6 (20-97)||(21025246-21025323)
chr6 (20-90)||(10054378-10054448)
chr6 (20-85)||(8014790-8014855)
chr6 (20-84)||(7267778-7267842)
chr6 (25-85)||(21891362-21891422)
chr6 (8-83)||(1240618-1240693)
chr6 (47-90)||(34801095-34801138)
chr6 (26-88)||(6776807-6776869)
chr6 (21-83)||(21871304-21871365)
chr6 (48-93)||(14049731-14049776)
chr6 (25-85)||(3211025-3211085)
chr6 (25-81)||(24625857-24625913)
chr6 (20-96)||(29052324-29052400)
chr6 (25-85)||(30533982-30534042)
chr6 (20-88)||(32675908-32675976)
chr6 (8-83)||(2255738-2255812)
chr6 (8-85)||(25430773-25430847)
chr6 (57-100)||(30534065-30534107)
chr6 (27-85)||(6593103-6593161)
chr6 (25-83)||(6758631-6758689)
chr6 (20-85)||(10873988-10874051)
chr6 (25-83)||(12817116-12817174)
chr6 (8-85)||(2027184-2027260)
chr6 (20-85)||(17914948-17915012)
chr6 (25-85)||(1468178-1468237)
chr6 (59-95)||(10874099-10874135)
[»] chr2 (30 HSPs)
chr2 (26-94)||(887405-887473)
chr2 (25-95)||(4004811-4004881)
chr2 (20-85)||(25836731-25836796)
chr2 (8-84)||(4026929-4027003)
chr2 (47-94)||(7028167-7028214)
chr2 (47-94)||(7041387-7041434)
chr2 (8-79)||(33321320-33321390)
chr2 (20-97)||(12223842-12223919)
chr2 (20-97)||(12238502-12238579)
chr2 (14-85)||(4090491-4090561)
chr2 (20-83)||(21788461-21788524)
chr2 (47-85)||(27703504-27703542)
chr2 (20-85)||(34913409-34913474)
chr2 (59-95)||(9140665-9140701)
chr2 (7-83)||(29774749-29774824)
chr2 (15-83)||(33321418-33321485)
chr2 (8-64)||(36501523-36501578)
chr2 (8-83)||(755749-755824)
chr2 (27-82)||(13056353-13056408)
chr2 (47-90)||(41554626-41554669)
chr2 (8-85)||(2790078-2790155)
chr2 (20-82)||(22422188-22422249)
chr2 (51-85)||(27709718-27709752)
chr2 (25-77)||(8832464-8832519)
chr2 (54-95)||(37419909-37419950)
chr2 (57-90)||(42064964-42064997)
chr2 (25-94)||(42839344-42839413)
chr2 (67-95)||(35997291-35997319)
chr2 (28-85)||(38216025-38216078)
chr2 (25-85)||(40301354-40301413)
[»] scaffold0157 (1 HSPs)
scaffold0157 (14-85)||(24747-24819)
[»] scaffold0041 (2 HSPs)
scaffold0041 (42-96)||(109104-109158)
scaffold0041 (18-82)||(109009-109073)
[»] scaffold0024 (1 HSPs)
scaffold0024 (9-85)||(97215-97290)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-97)||(227696-227785)
[»] scaffold0027 (1 HSPs)
scaffold0027 (47-90)||(142336-142379)
[»] scaffold0022 (1 HSPs)
scaffold0022 (30-95)||(89282-89347)
[»] scaffold0015 (1 HSPs)
scaffold0015 (34-95)||(48805-48865)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-83)||(178504-178568)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 35083324 - 35083112
Alignment:
Q  1 ttttaatttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||       | | |   ||||||||||||||||||||||||||||||||||||||||||||||    
T  35083324 ttttaatttcatgagctgtttttctcataaactaccttg-------tttcagggatatataaaagtttatttatttgcataagctcaaaaataagcctaa 35083232  T
Q  101 cttgtttcagggatacctgcagttttaaatggtatgtcaaatgaatttccaaccatggtttatccaaattccgctacaatacagctctatagcagctatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35083231 cttgtttcagggatacctgcagttttaaatggtatgtcaaatgaatttccaaccatggtttattcaaattccgctacaatacagctctatagcagctatt 35083132  T
Q  201 tgacgacagtaaatactaat 220  Q
    ||||||||||||||||||||    
T  35083131 tgacgacagtaaatactaat 35083112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 28625558 - 28625472
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| |||||||||| |||||||||||||||| |||| |||||||||||  |||||| ||||||||||||||||||| |||||||||    
T  28625558 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataatacttaaaagcttatttatttgcataagctaaaaaataag 28625472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 12467343 - 12467269
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||    
T  12467343 ttcataagctgtttttttcataaactaccttgacaagcttatgaataatacataaaagcttatttatttgcataa 12467269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 42706856 - 42706786
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||| |||| |||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  42706856 ataaactaccttgacaagcttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagcc 42706786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 41534701 - 41534613
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| || ||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||| || |||||||||||    
T  41534701 ttcataagctgttttt-tcgtaaactaccttgacaagcttatgaataatacataaaagcttatttatttgcataatctgaaaaataagcc 41534613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 1943072 - 1943000
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||||| |||| |||| |||||| ||||||  ||||||| |||||||||||||||||||||||    
T  1943072 tcataaactaccttgacaagcttatggataatacataaaaacttatttacttgcataagctcaaaaataagcc 1943000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 6144805 - 6144730
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  6144805 ttttttcataaaataccttgacaagcttatgagtaatatataaaagcttatttatttacatgagctcaaaaataag 6144730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 13060610 - 13060684
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| |||||||||||||||| |||| |||||| |||| ||||||| |||||||||||||||||    
T  13060610 ttcataagctgttttt-tcataaactaccttgacaagcttatgaacaatacataaaagcttatttatttgcataag 13060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 3977542 - 3977467
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||||||||| |||| ||||||||||  | ||||||||||||||||||  |||||||||||||||||    
T  3977542 ttttttcataaactaccttgacaagcttatgaataatgcacaaaagtttatttatttgc--aagctcaaaaataagcc 3977467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 13625534 - 13625608
Alignment:
Q  14 agctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaa 88  Q
    |||||||||| |||||||||||||  | |||| ||||||||||| |||||||  |||||||||||||||||||||    
T  13625534 agctgtttttatcataaactacctcaacaagcttatgaataataaataaaagcatatttatttgcataagctcaa 13625608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 40697063 - 40696993
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||| |||||||| |||| ||| ||||||| ||||||  |||||||||||||||||||||||||||||    
T  40697063 tcataaaataccttgacaagcttataaataatacataaaaacttatttatttgcataagctcaaaaataag 40696993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 40452486 - 40452574
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||| | |||||||||||||||| |||| ||||||||||  ||||||| |||||  ||||||||||||| ||||||||||    
T  40452486 ttcataagctgtttct-tcataaactaccttgacaagcttatgaataatgcataaaagcttattcctttgcataagctcgaaaataagcc 40452574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 1868908 - 1868836
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||||| |||| | ||||||||| ||||||| ||||||||| |||| ||||||| ||||||||    
T  1868908 tcataaactaccttgacaagcttgtgaataatacataaaagcttatttattagcatgagctcaagaataagcc 1868836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 22201960 - 22202020
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||| |||| ||||||||||| ||||||| |||||||||| ||||||||    
T  22201960 tcataaactaccttgacaagcttatgaataatacataaaagcttatttatttacataagct 22202020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 41059813 - 41059885
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||| ||||||| |||| ||||||||||| ||||||| |||||| |||||||||||| |||| ||||||    
T  41059813 tcataaacaaccttgataagcttatgaataatacataaaagcttatttgtttgcataagctaaaaagtaagcc 41059885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 1473434 - 1473360
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| ||||||| || ||||| |||| ||||||||||| ||||||| |||||||||||||||||    
T  1473434 ttcataagctgttttt-tcataaattaacttgacaagcttatgaataatacataaaagcttatttatttgcataag 1473360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 12987033 - 12987096
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||| |||||||||||||||| |||| |||||| |||| ||||||| |||||||||||||||||    
T  12987033 ttttttcataaactaccttgacaagcttatgaacaatacataaaagcttatttatttgcataag 12987096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 10537238 - 10537303
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||| ||||| |||| ||| ||||||| ||||||| |||||||||||||||||||    
T  10537238 ttttttcataaactatcttgacaagcttataaataatacataaaagcttatttatttgcataagct 10537303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 24030282 - 24030217
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| ||||||||||| |||| |||| ||||||||||| ||||||| ||||||||||| |||||||    
T  24030282 ttttttcataaactactttgacaagcttatgaataatacataaaagcttatttatttggataagct 24030217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 29922213 - 29922270
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||||||||||||| |||| ||||||||||| ||||||  ||||||||||||||||    
T  29922213 tcataaactaccttgacaagcttatgaataatacataaaaacttatttatttgcataa 29922270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 42852089 - 42852024
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||| ||||| |||| ||||||||||| ||||||| ||||||||||| |||||||    
T  42852089 ttttttcataaactatcttgacaagcttatgaataatacataaaagcttatttatttgaataagct 42852024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 6125327 - 6125279
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  6125327 tatgaataatacataaaagtttatttatttacataagttcaaaaataag 6125279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 17128340 - 17128280
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||| |||| |||  ||||||||||| ||||||| |||||||||||||||||||    
T  17128340 tcataaactactttgataagtttatgaataatacataaaagcttatttatttgcataagct 17128280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 17657309 - 17657238
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaa 91  Q
    |||| |||||||||||  ||  |||| ||||||||||| ||||||| ||||||||||||||||| |||||||    
T  17657309 ttttttcataaactacaatggcaagcttatgaataatacataaaagcttatttatttgcataagttcaaaaa 17657238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 41419579 - 41419494
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| |||| |||||||||||   ||||  |||||||| ||||||| || |||||||||||    
T  41419579 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataata---aaaaacttatttatatgcataatctgaaaaataagcc 41419494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 43268645 - 43268704
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagc 84  Q
    ||||||||||||||||  ||| ||| ||||||| ||||||| ||||||||||||||||||    
T  43268645 tcataaactaccttgaccagcttattaataatacataaaagcttatttatttgcataagc 43268704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 10274311 - 10274266
Alignment:
Q  50 gaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||    
T  10274311 gaataatatataaaatcttatttatttgcataaactcaaaaataag 10274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 1576699 - 1576633
Alignment:
Q  17 tgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||| |||||||||| |||| |||| |||||| |||| |||||||||||||||||||| ||||||    
T  1576699 tgtttttc-cataaactacattgacaagcttatgaa-aatacataaaagtttatttatttgcttaagct 1576633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1608116 - 1608182
Alignment:
Q  17 tgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||| |||||||||| |||| |||| |||||| |||| |||||||||||||||||||| ||||||    
T  1608116 tgtttttc-cataaactacattgacaagcttatgaa-aatacataaaagtttatttatttgcttaagct 1608182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 2878700 - 2878760
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||| || |||| || | ||||||||||| ||||||| |||||||||||||||||||    
T  2878700 tcataaaccacattgacaaacttatgaataatagataaaagcttatttatttgcataagct 2878760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 43010695 - 43010639
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||||||  ||| || ||||||||||||| |||||||||||||||||| ||||||    
T  43010695 ataaactacaatgacaaacgtatgaataatacataaaagtttatttatttacataag 43010639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 14243903 - 14243825
Alignment:
Q  7 tttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||| ||||||||||  ||||||||||||| || | | |||||||| || ||| ||| |||||||||| ||||||||    
T  14243903 tttcataagctgttttttccataaactaccttaaacaacttatgaatattacatagaagcttatttatttacataagct 14243825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 28357256 - 28357294
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  28357256 ataaaagcttatttatttgcataagctaaaaaataagcc 28357294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 31637102 - 31637184
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| ||||||| || ||||||| |||||||| |||| ||||||||||| |||||||     ||||||||||||||||| |||||||    
T  31637102 ttcataagctgttctt-tcataaattaccttgacaagcttatgaataatacataaaag----cttatttgcataagctcataaataag 31637184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 2670137 - 2670080
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||||||||||||| || | |||||||| || ||||||| || |||||||||||||    
T  2670137 tcataaactaccttgacaaacttatgaatagtacataaaagattgtttatttgcataa 2670080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 7364282 - 7364249
Alignment:
Q  57 atataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||| ||||||||||||||||||||||||    
T  7364282 atataaaagcttatttatttgcataagctcaaaa 7364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 43268607 - 43268570
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  43268607 ataaaagcttatttattttcataagctcaaaaataagc 43268570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 6008329 - 6008361
Alignment:
Q  51 aataatatataaaagtttatttatttgcataag 83  Q
    ||||||| |||||||||||||||||||||||||    
T  6008329 aataatacataaaagtttatttatttgcataag 6008361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 13625493 - 13625465
Alignment:
Q  57 atataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||||||||||||||||    
T  13625493 atataaaagtttatttatttgcataagct 13625465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 35536923 - 35536838
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatga---ataatatataaaagtttatttatttgcataagctcaaaaa 91  Q
    ||||| |||||||||| |||||||||| ||||| |||| |||||   |||| | ||||||| |||| |||||||||||||| |||||    
T  35536923 ttcataagctgttttt-tcataaactatcttgacaagcttatgatgaataacacataaaagcttatgtatttgcataagctaaaaaa 35536838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 48591432 - 48591520
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  48591432 ttcataagctgttttt-tcataaactaccttgacaagcgtatgaataatatataaaaacttatttatttgcataagctcagaaataagcc 48591520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 52274128 - 52274216
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| || ||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  52274128 ttcataagctgttttt-tcgtaaactaccttgataagcttatcaataatacataaaagtttatttatttgcataagctcaaaaataagcc 52274216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 7148844 - 7148762
Alignment:
Q  14 agctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||| ||| |||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  7148844 agctgttttt-tcaaaaactaccttgacaagcttatgaataatacataaaagcttatttatttgcataagctcaaaaataagcc 7148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 36740982 - 36740896
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||| |||| ||| ||||||||||| |||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  36740982 ttcatgaactgtattt-tcataaactactttgacaagcttatgcataatatataaaagcttatttatttgcataagctcaaaaataag 36740896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 897037 - 896967
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    |||| ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  897037 ttttttcataaactacattgacaagcttatgaataatacataaaagtttatttatttgcataagctcaaaa 896967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 825760 - 825672
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||||| |||||||||| || || | || ||||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  825760 ttcatgagctgttttt-tcataaactaactagacaggcttatgaataatatagaaaagcttatttatttgcataagctcaaaaagaagcc 825672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 28074433 - 28074357
Alignment:
Q  19 tttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| |||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||  |||||||||    
T  28074433 tttttttcataaactaccttgacaagcttatgaataatacataaaagcttatttatttgcataagcgaaaaaataag 28074357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 488403 - 488478
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||| |||||||||||||||| |||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||    
T  488403 ttttttcataaactaccttgacaagcttattaataatacataaaagcttacttatttgcataagctcaaaaataag 488478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 3564282 - 3564222
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||    
T  3564282 tcataaactaccttgacaaacttatgaataatatataaaagtttatttattttcataagct 3564222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 35124465 - 35124389
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||| |||||||||| |||||||||||||||| |||| |||||||| || ||||||| |||| ||||||||||||||    
T  35124465 ttcataagctgttttt-tcataaactaccttgacaagcttatgaatagtacataaaaggttatatatttgcataagct 35124389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 23297500 - 23297440
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||| || | ||||||||||| ||||||| |||||||||||||||||||    
T  23297500 tcataaactaccttgacaaacttatgaataatacataaaagcttatttatttgcataagct 23297440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 23335720 - 23335633
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    ||||| |||||||||| |||||||||||||||| | || ||||||||||| ||||||  | ||||||||||||||||||| ||| ||||    
T  23335720 ttcataagctgttttt-tcataaactaccttgatatgcttatgaataatacataaaatctcatttatttgcataagctcagaaaaaagc 23335633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 948145 - 948074
Alignment:
Q  14 agctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||| |||||||||||||||| ||   ||||||||||| ||||||| |||||||||| ||||||||    
T  948145 agctgtttttttcataaactaccttgacaaagttatgaataatacataaaagcttatttattttcataagct 948074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 12495658 - 12495730
Alignment:
Q  14 agctgtttttctcataaactacctt--gaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||| ||||||||||||||  || |||| ||||||||||| ||||||| |||||||||||||||||||    
T  12495658 agctgttttt-tcataaactaccttttgacaagcttatgaataatacataaaagcttatttatttgcataagct 12495730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27368171 - 27368234
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||| |||||| |||| |||| || | ||||||||||||||||||| |||||||||||||||||    
T  27368171 ttttttcataagctacattgacaaacttatgaataatatataaaagcttatttatttgcataag 27368234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 39932773 - 39932848
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||| ||||| |||||||| | || | ||| ||||||| ||||||||||||||||||||||||| | |||||||||    
T  39932773 ttttttcatacactaccttaacaatcttataaataatacataaaagtttatttatttgcataagtttaaaaataag 39932848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 29877717 - 29877644
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    ||||| ||||| |||| ||||||||||||||   |||| ||||||||||| ||||||| ||||||||||||||||    
T  29877717 ttcataagctgctttt-tcataaactaccttagcaagcttatgaataatacataaaagcttatttatttgcataa 29877644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 29997328 - 29997374
Alignment:
Q  19 tttttctcataaactaccttgaaaagcgtatgaataatatataaaag 65  Q
    ||||| |||||||||||||||| |||| |||||||||||||||||||    
T  29997328 tttttttcataaactaccttgataagcttatgaataatatataaaag 29997374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 43699496 - 43699565
Alignment:
Q  13 gagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| ||||||||||| |||| |||| ||||||||| | ||||||| ||||||||||| |||||    
T  43699496 gagctgttttt-tcataaactacattgacaagcttatgaataagacataaaagcttatttatttgtataag 43699565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 28663464 - 28663420
Alignment:
Q  51 aataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||    
T  28663464 aataatacataaaagctcatttatttgcataagctcaaaaataag 28663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 212967 - 213029
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||| |||||||||||||| | |||| ||||||||||| ||||||  |||||||||||||||||    
T  212967 ttttttcataaactaccttaacaagcttatgaataataaataaaa-cttatttatttgcataag 213029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 29996685 - 29996720
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataa 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29996685 tatgaataatatataaaagcttatttatttgcataa 29996720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 46704278 - 46704351
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| |||||||||||||| | ||||  |||||||||| ||||||| ||| |||||||||||||    
T  46704278 ttcataagctgttttt-tcataaactaccttaacaagctcatgaataataaataaaagctta-ttatttgcataag 46704351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 8601268 - 8601198
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    |||| ||||||||||| |||| | || ||| ||||||| | ||||| | ||||||||||||||||||||||    
T  8601268 ttttttcataaactacattgacaggcttataaataatagaaaaaagctcatttatttgcataagctcaaaa 8601198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 54412097 - 54412143
Alignment:
Q  51 aataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||||| |||||| |||||||||||||||||| | |||||||||||    
T  54412097 aataatacataaaaatttatttatttgcataagttaaaaaataagcc 54412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 2141669 - 2141632
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  2141669 ataaaagcttatttatttgcataagctctaaaataagc 2141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 18424301 - 18424358
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||||||||||| | |||  ||||||||||| ||||||| ||||||||||| ||||    
T  18424301 tcataaactaccttcacaagtttatgaataatacataaaagcttatttatttgtataa 18424358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 40699423 - 40699358
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||||| |||| ||||   | || |||||| ||||||||||||||||||||    
T  40699423 ttttttcataaactaccttgacaagcttatgcgcactacataaaaatttatttatttgcataagct 40699358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 41228970 - 41228905
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| | |||| ||||||||||| |||||||  ||||||  ||||||||||    
T  41228970 ttttttcataaactaccttaacaagcttatgaataataaataaaagcctatttacctgcataagct 41228905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 3966799 - 3966733
Alignment:
Q  16 ctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagc 84  Q
    ||||||||| |||||| || |||||||| | |||||| |||| |||||| |||||||||||||||||||    
T  3966799 ctgtttttc-cataaaatagcttgaaaa-cttatgaacaatacataaaaatttatttatttgcataagc 3966733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 8130550 - 8130490
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||| ||||| ||| || | ||||||||||  ||||||| |||||||||||||||||||    
T  8130550 tcataagctaccctgacaaacttatgaataatgcataaaagcttatttatttgcataagct 8130490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 11298655 - 11298595
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||| | ||||  |||||||||| ||||||| ||| ||| |||||||||||    
T  11298655 tcataaactaccttaagaagctcatgaataataaataaaagcttaattacttgcataagct 11298595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 15179879 - 15179820
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||| |||| | ||| ||||||| |||||| | ||||||||||||||||||    
T  15179879 tcataaactaccttaaaaa-cttataaataatacataaaaatatatttatttgcataagct 15179820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 17222896 - 17222852
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaa 64  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||    
T  17222896 ttttttcataaactaccttgacaagcttatgaataatacataaaa 17222852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 28879120 - 28879048
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  28879120 tcataaactaccttgacaagcttatgaataatacataaaagcttatttatttgcataagctcaaaaataagcc 28879048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 32975749 - 32975684
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  32975749 tcataaactaccttgacaagcttatgaataatatataaaagcttatttatttgcataagctcaaaa 32975684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 35453488 - 35453400
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| || | ||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  35453488 ttcataagctgttttt-tcataaactaccttgataaacttatgaataatacataaaagcttatttatttgcataagctaaaaaataagcc 35453400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 34286572 - 34286657
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| ||||||||||| ||  ||||||||||| |||| ||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  34286572 ttcataagctgtttttcaca--aactaccttgacaagcttatgaataatacataaaagcttatttatttacataagctcaaaaataag 34286657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 32213036 - 32213116
Alignment:
Q  15 gctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||| || |||||||||| | ||| |||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  32213036 gctgttattttcataaactaacctgacaagcttatgaataatacataaaagcttatttatttgcataagcttaaaaataag 32213116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 38895726 - 38895660
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctc 86  Q
    |||| |||||||||||||| | |||| ||||||||||| |||||||||||||| |||||||||||||    
T  38895726 ttttttcataaactaccttaacaagcttatgaataataaataaaagtttatttttttgcataagctc 38895660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 10298934 - 10299022
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||| ||| | ||||||| |||||||||||||| ||||| || |||||    
T  10298934 ttcataagctgttttt-tcataaactaccttgacaagcttatgaatgatacaaaaaagttaatttatttgcataaactcaacaagaagcc 10299022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 24350538 - 24350612
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataa 94  Q
    |||| ||||||| ||| |||| |||| ||||||||||||||||||| ||| |||||||||||| || ||||||||    
T  24350538 ttttttcataaattacgttgacaagcttatgaataatatataaaagcttaattatttgcataaactaaaaaataa 24350612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 13265546 - 13265480
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaa 91  Q
    |||| |||||| |||| |||| ||||||||||| ||||||| |||||||||||||||| ||| ||||    
T  13265546 tcatgaactactttgacaagcttatgaataatacataaaagcttatttatttgcataaactcgaaaa 13265480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 14709542 - 14709617
Alignment:
Q  6 atttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||||||||||||||| |||||||||| ||||| |||| |||||||  ||  |||||| ||||||| ||||||||    
T  14709542 atttcatgagctgttttt-tcataaactagcttgacaagcttatgaattgtacttaaaagcttatttagttgcataa 14709617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 19327907 - 19327871
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| |||||||||||||||||||||||||    
T  19327907 tatgaataatacataaaagtttatttatttgcataag 19327871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 32131502 - 32131442
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||| || | || |||||||  ||||||| |||||||||||||||||||    
T  32131502 tcataaactaccttgacaaacttaggaataatgcataaaagcttatttatttgcataagct 32131442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 35168460 - 35168512
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttattt 72  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  35168460 ttttttcataaactaccttgacaagcttatgaataatacataaaagcttattt 35168512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 90
Target Start/End: Complemental strand, 9130988 - 9130957
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||||||||||||||||||||||||||    
T  9130988 ataaaagtttatttatttgcataagctcaaaa 9130957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 41145448 - 41145487
Alignment:
Q  51 aataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  41145448 aataataaataaaagcttatttatttgcataagctcaaaa 41145487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 18396964 - 18396926
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  18396964 ataaaagcttttttatttgcataagctcaaaaataagcc 18396926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 29243090 - 29243147
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||| |||| | ||| ||||||| ||||||| |||||||||||||||||||    
T  29243090 ataaactaccttaaaaa-cttataaataatacataaaagcttatttatttgcataagct 29243147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 35285996 - 35285930
Alignment:
Q  19 tttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||| ||||||||||| ||||  ||| ||||||||| | | ||||| |||||||||||||||||||    
T  35285996 tttttttcataaactactttgacgagcttatgaataacacacaaaagcttatttatttgcataagct 35285930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 9131169 - 9131218
Alignment:
Q  42 aagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaa 91  Q
    |||| ||| ||||||| ||||||| |||| ||||||||||||||||||||    
T  9131169 aagcttataaataatacataaaagcttatatatttgcataagctcaaaaa 9131218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38338870 - 38338934
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| |||| | ||| |||||||| |||||  |||||||||||||||||||    
T  38338870 ttttttcataaactaccttaaaaa-cttataaataatatttaaaaacttatttatttgcataagct 38338934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 42102173 - 42102109
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| |||| | ||| ||||||| ||||||  |||||||||||||||||||    
T  42102173 ttttttcataaactaccttaaaaa-cttataaataatacataaaaacttatttatttgcataagct 42102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 42363336 - 42363400
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| |||| | ||| ||||||| ||||||  |||||||||||||||||||    
T  42363336 ttttttcataaactaccttaaaaa-cttataaataatacataaaaacttatttatttgcataagct 42363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 2289913 - 2289973
Alignment:
Q  28 taaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaa 88  Q
    ||||||| ||| | |||| |||| |||||| ||||||  ||||||||||||||||||||||    
T  2289913 taaactatcttaacaagcttatggataataaataaaaacttatttatttgcataagctcaa 2289973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 16972329 - 16972301
Alignment:
Q  57 atataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||||||||||||||||    
T  16972329 atataaaagtttatttatttgcataagct 16972301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 28280776 - 28280700
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    |||| ||||||||||| || | || | ||| ||||||| ||||| |  ||||||||||||||||||| |||||||||    
T  28280776 ttttttcataaactacattaacaaacttataaataatacataaatgcatatttatttgcataagctctaaaataagc 28280700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 48819377 - 48819289
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||||| || |||| | |||||||||||||||||||||||||||||    
T  48819377 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataatacattaaagctcatttatttgcataagctcaaaaataagcc 48819289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 6337764 - 6337850
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||||| ||||||| |||||||||| ||||||||| ||||||||    
T  6337764 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataatacataaaagcttatttatttacataagctctaaaataag 6337850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 37329420 - 37329510
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagccta 99  Q
    ||||| |||||||||| |||||||||||||||| |||  ||||||||||| ||||||| | |||||||||||||| ||||||||||||||||    
T  37329420 ttcataagctgttttt-tcataaactaccttgacaagtttatgaataatacataaaagctcatttatttgcataatctcaaaaataagccta 37329510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 31378768 - 31378845
Alignment:
Q  18 gtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||| |||||||||||||||| |||| | | ||||||||||||||| ||||||||||||||||||| |||||||||    
T  31378768 gtttttttcataaactaccttgacaagcttgttaataatatataaaagcttatttatttgcataagcttaaaaataag 31378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 15515366 - 15515441
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||| ||||||||| |||||| ||||||||||||    
T  15515366 ttttttcataaactaccttgacaagcttatgaataatacataaaagcttatttattagcataaactcaaaaataag 15515441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 45267544 - 45267457
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| |||||||||| |||||||||||||||| ||||  || |||||||   ||||| |||||||||||||||||||||||||||||    
T  45267544 ttcataagctgtttttttcataaactaccttgacaagctaataaataatactaaaaagcttatttatttgcataagctcaaaaataag 45267457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 1005407 - 1005330
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||| |||||||| || |||| |||||||||||  |||||| ||||||||||||||||||| |||||||||||    
T  1005407 ttttttcattaactacctagacaagcttatgaataatacgtaaaagcttatttatttgcataagcttaaaaataagcc 1005330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 4068182 - 4068117
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||| |||||    
T  4068182 ttttttcataaactaccttgacaagcttatgaataatacataaaagcttatttatttgcacaagct 4068117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 18327602 - 18327526
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||| |||||||||| |||||||||| ||||| |||| ||||| ||||| ||||||| |||||||||||||||||||    
T  18327602 ttcataagctgttttt-tcataaactatcttgacaagcttatgagtaatacataaaagcttatttatttgcataagct 18327526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 26936928 - 26936849
Alignment:
Q  17 tgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||||||||||| |||| ||||| || || ||| ||| ||||||||||||||||||| |||||||||||    
T  26936928 tgtttgtctcataaactaccttgacaagcttatgagta-tacatagaagcttatttatttgcataagctaaaaaataagcc 26936849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 3069862 - 3069944
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaa 91  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||||| || |||| ||| ||||||| ||||||| |||||    
T  3069862 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataatacattaaagcttacttatttgtataagctaaaaaa 3069944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 26988226 - 26988136
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttattta-----tttgcataagctcaaaaataa 94  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||| | ||||||| |||||||     |||||||||||||||||||||    
T  26988226 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataagacataaaagcttatttatttgttttgcataagctcaaaaataa 26988136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 36423005 - 36423068
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaa 88  Q
    |||||||||||||| | || | ||||||||||| ||||||| ||||||||||||||||||||||    
T  36423005 tcataaactaccttaacaaacttatgaataataaataaaagcttatttatttgcataagctcaa 36423068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 28870260 - 28870214
Alignment:
Q  51 aataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  28870260 aataatacataaatgtttatttatttgcataagctcaaaaataagcc 28870214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 35897647 - 35897705
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| ||||||||| ||||||||||| ||||||  |||||||||||||||||    
T  35897647 tcataaactactttgaaaagcttatgaataataaataaaaacttatttatttgcataag 35897705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 16888974 - 16889061
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||| | |||| ||||||||||| ||||||| ||||||||||||  ||||| || ||||||||    
T  16888974 ttcataagctgttttt-tcataaactacctt-acaagcttatgaataatacataaaagcttatttatttgcgcaagctaaacaataagcc 16889061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 13039014 - 13038954
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcat 80  Q
    |||| |||||||||||||| | ||||  |||||||||||||||||| ||||||||||||||    
T  13039014 ttttttcataaactaccttaacaagctcatgaataatatataaaagcttatttatttgcat 13038954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 35590208 - 35590134
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| |||||||| ||||||| |||| ||||||  ||| ||||||| |||||||||||||||||    
T  35590208 ttcataagctgttttt-tcataaacaaccttgacaagcttatgaactatacataaaagcttatttatttgcataag 35590134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 10365233 - 10365176
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    ||||||||||| |||| |||| ||| ||||||| ||||||||||||| ||||||||||    
T  10365233 tcataaactactttgacaagcttattaataatacataaaagtttattcatttgcataa 10365176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 28122683 - 28122618
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| | ||||  |||||||||| ||||||| | |||||||||||||||||    
T  28122683 ttttttcataaactaccttaagaagctcatgaataataaataaaagctaatttatttgcataagct 28122618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 39941508 - 39941447
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcata 81  Q
    |||| ||||||||||  |||| |||| ||||||||||| ||||||||| |||||||||||||    
T  39941508 ttttttcataaactattttgacaagcttatgaataatacataaaagttcatttatttgcata 39941447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 41196718 - 41196795
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||| |||||||||| ||||||||||| |||| |||| ||||||||||| ||||||    | ||||||||||||||||||||    
T  41196718 ttcataagctgttttt-tcataaactacattgacaagcttatgaataatacataaaa----acttatttgcataagctcaaaa 41196795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 10082330 - 10082254
Alignment:
Q  7 tttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||| || ||||||| |||||||||||||||| || | ||| ||||| | ||||||  |||||||||||||||||    
T  10082330 tttcataagttgtttttttcataaactaccttgacaaacttatcaataacacataaaaacttatttatttgcataag 10082254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 391225 - 391170
Alignment:
Q  31 actaccttgaaaagcgtatgaataatatat-aaaagtttatttatttgcataagct 85  Q
    ||||| |||| |||| |||||||||||||| ||||| |||||||||||||||||||    
T  391225 actacattgacaagcttatgaataatatataaaaagcttatttatttgcataagct 391170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 8410210 - 8410140
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    ||||||||||| || |||| | ||||||||||| ||||||  ||||||||||||||| |||| |||||||||    
T  8410210 tcataaactactttaaaaa-cttatgaataatacataaaaacttatttatttgcataggctctaaaataagc 8410140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 22593448 - 22593491
Alignment:
Q  42 aagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||    
T  22593448 aagcttatgaataatacataaaaatttatttatttgcataagct 22593491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 51409731 - 51409805
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcctaa 100  Q
    ||||||||||| || | || | ||||||||||| ||| ||  |||||||||||||||||||| |||||||||||||    
T  51409731 tcataaactacatttacaaacttatgaataatacatacaaacttatttatttgcataagctc-aaaataagcctaa 51409805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 1565400 - 1565466
Alignment:
Q  19 tttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||| |||||||||||||||| |||| || |||||||  ||||||| || ||||||| ||||||||    
T  1565400 tttttttcataaactaccttgacaagcttacgaataatgcataaaagcttgtttatttacataagct 1565466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 23544870 - 23544821
Alignment:
Q  7 tttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataata 57  Q
    |||||| |||||||||| |||||||||||||||| |||| |||||||||||    
T  23544870 tttcataagctgttttt-tcataaactaccttgacaagcttatgaataata 23544821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 25485815 - 25485749
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctc 86  Q
    |||| |||||||||||||| | |||   |||||||| | |||||| |||||||||||||||||||||    
T  25485815 ttttttcataaactaccttaataaggtcatgaataacaaataaaaatttatttatttgcataagctc 25485749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 37712134 - 37712073
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||| |||||||||||||||| |||| ||||||| ||| ||||||| ||||| ||||||||||    
T  37712134 ttttttcataaactaccttgacaagcttatgaat-atacataaaagcttattcatttgcataa 37712073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 38781093 - 38781063
Alignment:
Q  67 ttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||||||||||||||||||||    
T  38781093 ttatttatttgcataagctcaaaaataagcc 38781063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 10850096 - 10850149
Alignment:
Q  26 cataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgca 79  Q
    |||||||||| |||| || | ||||||||||| ||||||| |||||||||||||    
T  10850096 cataaactacgttgacaaccttatgaataatacataaaagcttatttatttgca 10850149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17814257 - 17814193
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| |||| | ||| ||||||| |||||| | ||||||||||||||||||    
T  17814257 ttttttcataaactaccttaaaaa-cttataaataatacataaaaatgtatttatttgcataagct 17814193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 20169331 - 20169266
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| ||||||||||  || |||| | ||| ||||||| ||||||| |||||||||||||||||||    
T  20169331 ttttttcataaactatatttaaaaacttataaataatacataaaagcttatttatttgcataagct 20169266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 32497291 - 32497355
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| |||| | ||| ||||||| ||||||  |||||||||||||||||||    
T  32497291 ttttttcataaactaccttaaaaa-cttataaataatacataaaaacttatttatttgcataagct 32497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 36259264 - 36259231
Alignment:
Q  57 atataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||| ||||||||||||||||||||||||    
T  36259264 atataaaagcttatttatttgcataagctcaaaa 36259231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 39941577 - 39941516
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcata 81  Q
    |||| |||| |||||| |||| |||| ||||||||||| |||||| || |||||||||||||    
T  39941577 ttttttcattaactactttgacaagcttatgaataatacataaaaattcatttatttgcata 39941516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 4068228 - 4068256
Alignment:
Q  57 atataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||||||||||||||||    
T  4068228 atataaaagtttatttatttgcataagct 4068256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 13039060 - 13039088
Alignment:
Q  57 atataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||||||||||||||||    
T  13039060 atataaaagtttatttatttgcataagct 13039088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 28690082 - 28690004
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaa--gtttatttatttgcataagct 85  Q
    ||||| |||||||| | |||||||||||||||| || | ||||||||||| ||||||   | ||||||||||||||||||    
T  28690082 ttcataagctgtttgt-tcataaactaccttgacaaacttatgaataatacataaaaccttatatttatttgcataagct 28690004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 43079942 - 43080028
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||| | ||||||| ||||||||||||||||||| |||||||||    
T  43079942 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataacacataaaagcttatttatttgcataagctaaaaaataag 43080028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 52021325 - 52021236
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| || | ||||||||||| |||||||  |||||||||||||||||| |||||| ||||    
T  52021325 ttcataagctgtttttttcataaactaccttgacaatcttatgaataatacataaaagcatatttatttgcataagctaaaaaatgagcc 52021236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 40581091 - 40581159
Alignment:
Q  15 gctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||| |||||||||||||||| |||| ||| ||||||| ||||||| |||||||||||||||||    
T  40581091 gctgtttttttcataaactaccttgacaagcttattaataatacataaaagcttatttatttgcataag 40581159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 22809212 - 22809278
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatat-aaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||    
T  22809212 ttttttcataaactaccttgacaagcttatgaataatatataaaaagcttatttatttgcataagct 22809278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 52421160 - 52421230
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||| |||||||||||| |||||| ||||    
T  52421160 ttttttcataaactaccttgacaagcttatgaataatacataaaagcttatttatttgcgtaagcttaaaa 52421230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 21296833 - 21296771
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||| |||||||||||||||| || ||||||||||||| ||||||  ||||||||||||||||    
T  21296833 ttttttcataaactaccttgataaacgtatgaataatagataaaaacttatttatttgcataa 21296771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 3845922 - 3845865
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttg 77  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||||| |||||||||||    
T  3845922 ttttgtcataaactagcttgacaagcttatgaataatatataaaagcttatttatttg 3845865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 3870245 - 3870322
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||||||||| |||| |||||| || | ||||||| |||||| ||||||||||||| | ||||||||    
T  3870245 ttttttcataaactaccttgacaagcttatgaacaaaacataaaagcttatttttttgcataagctcgataataagcc 3870322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 48597886 - 48597963
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| ||||| ||||||| || || | |||||||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  48597886 ttttttcatacactacctcgacaaacttatgaataatttataaaagtttatgtatttgcataggctaaaaaataagcc 48597963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 51409460 - 51409395
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||||| || |  |||||||||| ||||||| |||||||||||||||||||    
T  51409460 ttttttcataaactaccttgacaaactcatgaataataaataaaagattatttatttgcataagct 51409395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 29270439 - 29270373
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatt 75  Q
    ||||| |||||||||| ||||||| || |||||||||| ||||||||||| ||||||| |||||||||    
T  29270439 ttcataagctgttttt-tcataaattatcttgaaaagcttatgaataatacataaaagcttatttatt 29270373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 40240596 - 40240667
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaa 91  Q
    |||| ||||||||||||| || | || ||||||||||| ||||||| || |||||||||||||||| |||||    
T  40240596 ttttttcataaactacctagacacgcttatgaataatacataaaagcttctttatttgcataagctaaaaaa 40240667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 53218059 - 53218122
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||  ||||||||| |||||||    
T  53218059 ttttttcataaactaccttgacaagcttatgaataatacataaaatcttatttattcgcataag 53218122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 23555523 - 23555560
Alignment:
Q  60 taaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23555523 taaaagcttatttatttgcataagctcaaaaataagcc 23555560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 45331314 - 45331391
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||  ||| | |||| |||| |||||| ||||||| |||||||||| |||||||| |||||||||||    
T  45331314 ttttttcataaactgtcttaacaagcttatgcataatacataaaaggttatttatttacataagctaaaaaataagcc 45331391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 10272197 - 10272129
Alignment:
Q  9 tcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcat 80  Q
    |||| |||||||||| ||| ||||| |||||||  || ||||||||||| ||||||||||||||||||||||    
T  10272197 tcataagctgttttt-tcagaaactgccttgaa--gcttatgaataatacataaaagtttatttatttgcat 10272129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 36638953 - 36638989
Alignment:
Q  54 aatatataaaagtttatttatttgcataagctcaaaa 90  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36638953 aatatataaaagtttatttacttgcataagctcaaaa 36638989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 37601053 - 37601121
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||||| ||| | |||| ||| ||||||| || || |||||||||||||||||||||| ||||||||    
T  37601053 ataaactatcttaacaagcttataaataatacattaacgtttatttatttgcataagctctaaaataag 37601121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 23816179 - 23816240
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatt 71  Q
    ||||| |||||||||| ||||||||||||||||| ||| ||||||||||| ||||||| |||||    
T  23816179 ttcataagctgttttt-tcataaactaccttgaatagcttatgaataata-ataaaagcttatt 23816240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 10521216 - 10521162
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgca 79  Q
    ||||||||||| |||| |||| ||||||||||| ||| ||| |||||||||||||    
T  10521216 tcataaactacattgacaagcttatgaataatacatataagcttatttatttgca 10521162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 10667460 - 10667402
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| |||| |||| ||||||||||| ||| ||| |||||||||||| ||||    
T  10667460 tcataaactacattgacaagcttatgaataatacatataagcttatttatttgcgtaag 10667402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 27769707 - 27769650
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| |||| |||| ||| ||||||||| ||||||| |||||||||||||||    
T  27769707 tcataaactacattgacaagcttataaataatata-aaaagttcatttatttgcataag 27769650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 29270465 - 29270503
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  29270465 ataaaagcttatttatttgcataagctaaaaaataagcc 29270503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 34707727 - 34707788
Alignment:
Q  14 agctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttattt 76  Q
    |||||||||| |||||||||||||| | |||| ||||||||||| ||||||| |||| |||||    
T  34707727 agctgttttt-tcataaactaccttaacaagcttatgaataatacataaaagcttatatattt 34707788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 2086710 - 2086775
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||| ||||| | |||  ||| ||||||| |||||||||||||||||| ||||||||    
T  2086710 ttttttcataaaccacctttacaagattataaataatacataaaagtttatttatttacataagct 2086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 52421100 - 52421071
Alignment:
Q  66 tttatttatttgcataagctcaaaaataag 95  Q
    ||||||||||||||||||||||||||||||    
T  52421100 tttatttatttgcataagctcaaaaataag 52421071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 4257320 - 4257383
Alignment:
Q  19 tttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||||||| |||| | ||| ||||||| ||||||  |||||||||||||||||    
T  4257320 tttttttcataaactaccttaaaaa-cttataaataatacataaaaacttatttatttgcataag 4257383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 24842153 - 24842189
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24842153 tatgaataatacataaaaatttatttatttgcataag 24842189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 32900747 - 32900815
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaa 88  Q
    |||| ||| |||||||||| | |||  ||||||||||| ||||||| |||| || ||||||||||||||    
T  32900747 ttttttcacaaactaccttaacaagtttatgaataataaataaaagcttatataattgcataagctcaa 32900815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 52895431 - 52895467
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  52895431 ataaaagtttatttatttgcataagctaaaaattaag 52895467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 47511121 - 47511033
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| ||||| ||| |||| | |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  47511121 ttcataagctgttttt-tcatagacttccttaacaagcttatgaataatacataaaagcttatttatttgcataagctcaaaaataagcc 47511033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 29378723 - 29378635
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||||| || |  || ||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  29378723 ttcataagctgttttt-tcataaactaccttgacaaactcataaataatacataaaagcttatttatttgcataagctcaaagataagcc 29378635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 44613492 - 44613557
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| | |||| ||||||||||| ||||||| |||||||||||||||||||    
T  44613492 ttttttcataaactaccttaacaagcttatgaataataaataaaagcttatttatttgcataagct 44613557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 17944564 - 17944517
Alignment:
Q  50 gaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  17944564 gaataatatataaaagcttatttatttgcataagctcaaaaattagcc 17944517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 41094192 - 41094138
Alignment:
Q  42 aagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  41094192 aagcttatgaataatacatagaagtttatttatttgcataagctaaaaaataagc 41094138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 1054081 - 1054162
Alignment:
Q  14 agctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||||||| | ||||||||| ||||||    | ||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  1054081 agctgttttttttataaactacattgaaatttttttgaataatacataaaagcttatttatttgcataagctcaaaactaag 1054162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 33288146 - 33288191
Alignment:
Q  48 atgaataatatataaaagtttatttatttgcataagctcaaaaata 93  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||    
T  33288146 atgaataatacataaaagcttatttatttgcataagctcaaaaata 33288191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 34922991 - 34922935
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||||||||||| || | ||||||||||| ||||||| |||||||||||||||||    
T  34922991 ataaactaccttgacaaacttatgaataatacataaaagcttatttatttgcataag 34922935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 40629441 - 40629500
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||||| |||| ||||||||||| || |||||||||||||||| |||||||    
T  40629441 tcataaactaccttgacaagcttatgaataatacat-aaagtttatttatttggataagct 40629500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 48895360 - 48895304
Alignment:
Q  23 tctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgca 79  Q
    |||||||||||||||||| |||| |||||||||||||| || | |||||||||||||    
T  48895360 tctcataaactaccttgataagcttatgaataatatatgaatgcttatttatttgca 48895304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 30181628 - 30181554
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| | |||||||||||||| |||| ||||||||||| ||||||| || ||||||||| ||||    
T  30181628 ttcataagctgttttt-tgataaactaccttgacaagcttatgaataatacataaaagcttctttatttgcctaag 30181554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 29390574 - 29390632
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||||||||||| | |||| ||||||||||| || |||| |||||||||||||||||    
T  29390574 tcataaactacctttacaagcttatgaataatacatcaaagattatttatttgcataag 29390632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 38372617 - 38372560
Alignment:
Q  28 taaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||||| || | ||||||||||| |||| || |||||||||||||||||||    
T  38372617 taaactaccttgacaaacttatgaataatacataagagcttatttatttgcataagct 38372560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 41037819 - 41037755
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| ||||||| |||||||| |||| | ||||||||| ||||||| |||||||||||||||||||    
T  41037819 ttttatcataaattaccttgacaagctt-tgaataatacataaaagcttatttatttgcataagct 41037755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 41094287 - 41094223
Alignment:
Q  18 gtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||| |||||||| ||||||| |||| ||||| ||||| ||||| | ||||||||||||||||    
T  41094287 gtttttttcataaaccaccttgacaagcttatgagtaatacataaaggcttatttatttgcataa 41094223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 41677434 - 41677378
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||| |||| || | ||||||||||| |||||| ||||||||||||||||||    
T  41677434 ataaactacattgacaaacttatgaataatacataaaaatttatttatttgcataag 41677378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 47648576 - 47648536
Alignment:
Q  49 tgaataatatataaaagtttatttatttgcataagctcaaa 89  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  47648576 tgaataataaataaaagtttatttatttgcataaactcaaa 47648536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 33204913 - 33204878
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataa 94  Q
    ||||||| ||||||||||||||||||||||||||||    
T  33204913 ataaaagcttatttatttgcataagctcaaaaataa 33204878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 14593219 - 14593150
Alignment:
Q  18 gtttttctcataaactaccttgaaaagcgtat--gaataatatataaaagtttatttatttgcataagct 85  Q
    |||||| ||||||||||| |||| |||| |||  |||||||| |||||  ||||||||||||||||||||    
T  14593219 gtttttttcataaactactttgacaagcttatatgaataatacataaacttttatttatttgcataagct 14593150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 29778481 - 29778443
Alignment:
Q  57 atataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  29778481 atataaaaatttatttatttgcataagctaaaaaataag 29778443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 48021671 - 48021728
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    ||||||||||| || | |||| ||||||||||| |||| || ||||||||||||||||    
T  48021671 tcataaactactttaacaagcttatgaataataaataagagcttatttatttgcataa 48021728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 14691318 - 14691378
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaag-tttatttatttgca 79  Q
    |||| ||||||| ||| |||| |||| ||||||||||| ||||||| ||||||||||||||    
T  14691318 ttttttcataaattacattgacaagcttatgaataatacataaaagctttatttatttgca 14691378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 14770 - 14845
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcctaa 100  Q
    ||||||||||| || |||| | ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  14770 tcataaactacatttaaaaacttatgaataatacataaaagcttatttatttgtataagctcaaaaataagcctaa 14845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 2034248 - 2034325
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||||||||| || | ||| ||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  2034248 ttttttcataaactaccttgacaaacttataaataatacataaaagcttatttatttgcataagctcaaaaacaagcc 2034325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 10755287 - 10755376
Alignment:
Q  7 tttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||||| |||| ||||| ||||||  |||||||| |||| |||||||||||  |||||| ||||||||||||||||||| |||||||||||    
T  10755287 tttcataagctattttt-tcataagttaccttgacaagcttatgaataatacgtaaaagcttatttatttgcataagctaaaaaataagcc 10755376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 21025246 - 21025323
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||||||| | |||| |||| |||||| ||||||| ||||||||||||||||||| |||||| ||||    
T  21025246 ttttttcataaactaccttaacaagcttatgcataatacataaaagcttatttatttgcataagctaaaaaattagcc 21025323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 10054448 - 10054378
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    |||| ||||||||||| || | || | ||||||||||| ||||||| ||||||||||||||||||||||||    
T  10054448 ttttttcataaactacatttacaaacttatgaataatacataaaagcttatttatttgcataagctcaaaa 10054378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 8014855 - 8014790
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||||| |||| ||||||||||  ||||||| ||| |||||||||||||||    
T  8014855 ttttttcataaactaccttgacaagcttatgaataatgaataaaagcttacttatttgcataagct 8014790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7267842 - 7267778
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagc 84  Q
    |||| |||||||||||||||  |||| ||||||||||| ||||||| |||||| |||||||||||    
T  7267842 ttttttcataaactaccttggcaagcttatgaataatacataaaagcttatttgtttgcataagc 7267778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 21891362 - 21891422
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||| |||| |||| |||||||||||||| |||  |||||||||||||||||||    
T  21891362 tcataaactacattgacaagcttatgaataatatatcaaaacttatttatttgcataagct 21891422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 1240618 - 1240693
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| || ||||||| || |||| |||||||| |||| ||||||||||| ||||||| ||||||||||| |||||    
T  1240618 ttcataagttgtttttttcgtaaattaccttgacaagcttatgaataatacataaaagcttatttatttgaataag 1240693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 34801095 - 34801138
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  34801095 tatgaataataaataaaagtttatttatttacataagctcaaaa 34801138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 6776869 - 6776807
Alignment:
Q  26 cataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaa 88  Q
    ||||||||||||| | |||| |||| ||| || ||||||| ||||||||||||||||||||||    
T  6776869 cataaactaccttaacaagcttatggatattaaataaaagcttatttatttgcataagctcaa 6776807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 21871304 - 21871365
Alignment:
Q  21 tttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||||||||||||||||| |||  ||| ||||||| ||||||||||| |||||||||||||    
T  21871304 tttctcataaactaccttgacaagt-tatcaataatacataaaagtttacttatttgcataag 21871365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 14049731 - 14049776
Alignment:
Q  48 atgaataatatataaaagtttatttatttgcataagctcaaaaata 93  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||    
T  14049731 atgaataatacataaaaatttatttatttgcataaactcaaaaata 14049776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 3211025 - 3211085
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||| |||| |||| ||| | ||||| ||||||| |||||||||||||||||||    
T  3211025 tcataaactacattgacaagcttatcagtaatacataaaagcttatttatttgcataagct 3211085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 24625913 - 24625857
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcata 81  Q
    |||||||||||||| | |||| ||||||||||| |||||||  ||||||||||||||    
T  24625913 tcataaactaccttaacaagcttatgaataatacataaaagcgtatttatttgcata 24625857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 29052400 - 29052324
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    |||| ||||||| |||||| | || | ||| ||||||| |||||||||||||| |||| |||||||| |||||||||    
T  29052400 ttttttcataaaataccttaacaaacttataaataatacataaaagtttatttttttgtataagctctaaaataagc 29052324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 30534042 - 30533982
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||| || | || | ||||||||||| ||||||| |||||||||||||||||||    
T  30534042 tcataaactacatttacaaacttatgaataatacataaaagcttatttatttgcataagct 30533982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 32675908 - 32675976
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaa 88  Q
    |||| |||||||| |||||   |||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  32675908 ttttttcataaacaaccttacgaagcttatgaataataaataaaagcttatttatttgcataagttcaa 32675976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 2255812 - 2255738
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| ||||||| |||||| | |||| ||||||| ||| ||||||| | |||||||||||||||    
T  2255812 ttcataagctgttttt-tcataaattaccttaacaagcttatgaatcatacataaaagctcatttatttgcataag 2255738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 25430773 - 25430847
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||   |||| ||||| | ||||||||||| |||||||    
T  25430773 ttcataagctgtttttttcataaactaccttgacaagcttatg---aatacataaatgcttatttatttgtataagct 25430847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 30534065 - 30534107
Alignment:
Q  57 atataaaagtttatttatttgcataagctcaaaaataagcctaa 100  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  30534065 atataaaagcttatttatttgcataagctc-aaaataagcctaa 30534107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 6593161 - 6593103
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||| |||  |||||| |||| |||||| || |||||||||||||||||    
T  6593161 ataaactaccttgataagtttatgaacaataaataaaaattaatttatttgcataagct 6593103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 6758689 - 6758631
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||||||||||| | |||| |||| |||||| | ||||| |||||||||||||||||    
T  6758689 tcataaactaccttaacaagcttatggataataaacaaaagcttatttatttgcataag 6758631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 10874051 - 10873988
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||||||||||| | |||| ||| ||||  ||||||||| |||||||| ||||||||||    
T  10874051 ttttctcataaactaccttaacaagcttattaata--atataaaagcttatttatatgcataagct 10873988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 12817116 - 12817174
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||||| ||||  ||| ||||||||||| || |||| |||||||||||||||||    
T  12817116 tcataaactacattgactagcttatgaataatacattaaagcttatttatttgcataag 12817174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 2027184 - 2027260
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||| |||||||||| |||||||||  ||||| || | | ||||||||  ||||||| |||||||||||||||||||    
T  2027184 ttcataagctgttttt-tcataaactgtcttgacaaacttctgaataatgcataaaagcttatttatttgcataagct 2027260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 17915012 - 17914948
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||| |||| | ||| ||||||| |||||| | ||||||||||||||||||    
T  17915012 ttttttcataaactaccttaaaaa-cttataaataatacataaaaatgtatttatttgcataagct 17914948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 1468237 - 1468178
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||| |||| | ||| ||||||| ||||||  |||||||||||||||||||    
T  1468237 tcataaactaccttaaaaacc-tataaataatacataaaaacttatttatttgcataagct 1468178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 10874099 - 10874135
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  10874099 ataaaagcttatttatttgcataagctaaaaaataag 10874135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 887473 - 887405
Alignment:
Q  26 cataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataa 94  Q
    ||||||||||||||| |||| ||||||||||| | ||||| ||||||||||||||||||||| ||||||    
T  887473 cataaactaccttgacaagcttatgaataatacaaaaaagcttatttatttgcataagctcagaaataa 887405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 4004881 - 4004811
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||||||| || |||||| |||||||| || ||||||| ||||||||||||||||| |||||||||||    
T  4004881 tcataaactactttaaaaagcttatgaatagtacataaaagattatttatttgcataagttcaaaaataag 4004811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 25836731 - 25836796
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||||||||| |||| ||||||||||| |||||||  ||||||||||||||||||    
T  25836731 ttttttcataaactaccttgacaagcttatgaataatacataaaagcatatttatttgcataagct 25836796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 4027003 - 4026929
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagc 84  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||| ||||| ||||||| ||||||||||||||||||    
T  4027003 ttcataagctgttttt-tcataaactaccttgacaagcttatga-taatacataaaagcttatttatttgcataagc 4026929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 7028214 - 7028167
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagctcaaaaataa 94  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  7028214 tatgagtaatatataaaagtttgtttatttgcataagctcaaaaataa 7028167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 7041434 - 7041387
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagctcaaaaataa 94  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  7041434 tatgagtaatatataaaagtttgtttatttgcataagctcaaaaataa 7041387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 33321320 - 33321390
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgca 79  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||| | ||||||| |||||||||||||    
T  33321320 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataagacataaaagcttatttatttgca 33321390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 12223919 - 12223842
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||||||||| | || ||||||||||| || |||| ||| ||||||||| ||||| |||||||||||    
T  12223919 ttttttcataaactaccttgacaggcttatgaataatacatgaaaggttacttatttgcaaaagcttaaaaataagcc 12223842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 12238502 - 12238579
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    |||| |||||||||||||| | |||| ||| ||||||| || || | |||||||||||||||||||| ||||||||||    
T  12238502 ttttttcataaactaccttaacaagcttataaataatacattaatgcttatttatttgcataagctctaaaataagcc 12238579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 4090561 - 4090491
Alignment:
Q  14 agctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||| ||||  |||||||||| |||  ||||||||||| || ||||||||||||||||||||||||    
T  4090561 agctgttttt-tcattgactaccttgacaagattatgaataatacatcaaagtttatttatttgcataagct 4090491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 21788524 - 21788461
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||| |||||||||| ||| | |||| ||||||||||| ||||||| |||||||||||||||||    
T  21788524 ttttttcataaactatcttaacaagcttatgaataataaataaaagcttatttatttgcataag 21788461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 27703504 - 27703542
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  27703504 tatgaataatatataaaagcttatttatttgcataagct 27703542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 34913409 - 34913474
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||| ||| | || | ||||||||||| ||||||| |||||||||||||||||||    
T  34913409 ttttttcataaactatcttaacaaacttatgaataatacataaaagcttatttatttgcataagct 34913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 9140701 - 9140665
Alignment:
Q  59 ataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9140701 ataaaagtttatttatatgcataagctcaaaaataag 9140665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 29774824 - 29774749
Alignment:
Q  7 tttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    |||||| ||| |||||| |||||||||||||| | || |  |||||||||  |||||||||||||||||||||||||    
T  29774824 tttcataagccgttttt-tcataaactaccttaacaaactaatgaataatgcataaaagtttatttatttgcataag 29774749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 33321418 - 33321485
Alignment:
Q  15 gctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||||||| |||||||||||||||| |||| ||||| ||||| ||||||  ||| |||||||||||||    
T  33321418 gctgttttt-tcataaactaccttgacaagcttatgagtaatacataaaaacttaattatttgcataag 33321485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 36501523 - 36501578
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaa 64  Q
    ||||| |||||||||| |||||||||||||||| |||| ||||||||||| ||||||    
T  36501523 ttcataagctgttttt-tcataaactaccttgacaagcttatgaataatacataaaa 36501578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 755749 - 755824
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| |||||||||| |||||||||||| | | |||| | ||||||||| ||||||| ||| |||||||| ||||    
T  755749 ttcataagctgtttttttcataaactaccgtaacaagcttctgaataatacataaaagcttaattatttgcgtaag 755824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 13056353 - 13056408
Alignment:
Q  27 ataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||||||||||| |||| |||||| |||| ||||||| |||| |||||||||||    
T  13056353 ataaactaccttgacaagcttatgaaaaatacataaaagcttatctatttgcataa 13056408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 41554626 - 41554669
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||    
T  41554626 tatgaataatacataaaagtttatttatttgtataagttcaaaa 41554669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 2790078 - 2790155
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaag-tttatttatttgcataagct 85  Q
    ||||| |||||||| | ||||||| |||||||| |||| ||| ||||||  ||||||| ||||||||||||||||||||    
T  2790078 ttcataagctgtttat-tcataaaataccttgacaagcttatcaataatgcataaaagctttatttatttgcataagct 2790155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 22422188 - 22422249
Alignment:
Q  20 ttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||| |||||||||||||| |||| | ||| ||||||||||||||  ||||||||||||||||    
T  22422188 ttttttcataaactaccttaaaaa-cttataaataatatataaaaacttatttatttgcataa 22422249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 27709718 - 27709752
Alignment:
Q  51 aataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||||||| |||||||||||||||||||    
T  27709718 aataatatataaaagcttatttatttgcataagct 27709752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 8832519 - 8832464
Alignment:
Q  25 tcataaactaccttgaaaagcgtatg---aataatatataaaagtttatttatttg 77  Q
    ||||||||||||||||||||| ||||   ||||||| ||||||| |||||||||||    
T  8832519 tcataaactaccttgaaaagcttatgattaataatacataaaagcttatttatttg 8832464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 37419950 - 37419909
Alignment:
Q  54 aatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||| ||||||| |||||||||||||||||||||||| ||||    
T  37419950 aatacataaaagcttatttatttgcataagctcaaaattaag 37419909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 42064964 - 42064997
Alignment:
Q  57 atataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||| ||||||||||||||||||||||||    
T  42064964 atataaaagcttatttatttgcataagctcaaaa 42064997  T

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Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 42839344 - 42839413
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataa 94  Q
    |||||||||| ||||| || | ||||||||||| ||||||  |||||||| | ||||||||||| |||||    
T  42839344 tcataaactaacttgacaaacttatgaataatacataaaaacttatttatctacataagctcaataataa 42839413  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 35997319 - 35997291
Alignment:
Q  67 ttatttatttgcataagctcaaaaataag 95  Q
    |||||||||||||||||||||||||||||    
T  35997319 ttatttatttgcataagctcaaaaataag 35997291  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 38216078 - 38216025
Alignment:
Q  28 taaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    ||||||||||||| |||| ||||||||||| ||||    |||||||||||||||||||    
T  38216078 taaactaccttgacaagcttatgaataatacataa----ttatttatttgcataagct 38216025  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 40301413 - 40301354
Alignment:
Q  25 tcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||||||| |||| | ||| ||||||| ||||||  |||||||||||||||||||    
T  40301413 tcataaactaccttaaaaa-cttataaataatacataaaaacttatttatttgcataagct 40301354  T

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Target: scaffold0157 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 24819 - 24747
Alignment:
Q  14 agctgtttttctcataaactacctt--gaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||||||||| ||||||||||||||  || |||| ||||||||||| ||||||| |||||||||||||||||||    
T  24819 agctgttttt-tcataaactaccttttgacaagcttatgaataatacataaaagcttatttatttgcataagct 24747  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 109104 - 109158
Alignment:
Q  42 aagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagc 96  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  109104 aagcttatgaataatacatagaagtttatttatttgcataagctaaaaaataagc 109158  T

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Target: scaffold0041; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 109009 - 109073
Alignment:
Q  18 gtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataa 82  Q
    |||||| |||||||| ||||||| |||| ||||| ||||| ||||| | ||||||||||||||||    
T  109009 gtttttttcataaaccaccttgacaagcttatgagtaatacataaaggcttatttatttgcataa 109073  T

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Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 97215 - 97290
Alignment:
Q  9 tcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagct 85  Q
    |||| |||||||||| ||||||||||||||||  ||| |||||||| || |||| || |||||||||||||||||||    
T  97215 tcataagctgttttt-tcataaactaccttgactagcttatgaatactacataatagcttatttatttgcataagct 97290  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 227785 - 227696
Alignment:
Q  8 ttcatgagctgtttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataagcc 97  Q
    ||||| |||||||||| |||||||||||||| | || | ||| |||| || || || | ||||||||| |||||||||| ||||||||||    
T  227785 ttcataagctgtttttttcataaactaccttaacaaacttataaatactacattaatgcttatttattcgcataagctctaaaataagcc 227696  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 142379 - 142336
Alignment:
Q  47 tatgaataatatataaaagtttatttatttgcataagctcaaaa 90  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||    
T  142379 tatgaataatacataaaagctcatttatttgcataagctcaaaa 142336  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 89282 - 89347
Alignment:
Q  30 aactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    ||||||||||| |||| |||||||| || || |||  || |||||||||||||||| |||||||||    
T  89282 aactaccttgataagcttatgaatagtacattaaaacttttttatttgcataagcttaaaaataag 89347  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 48805 - 48865
Alignment:
Q  34 accttgaaaagcgtatgaataatatataaaagtttatttatttgcataagctcaaaaataag 95  Q
    |||||||||| | ||||||||||| ||||||| ||||| ||||| |||||||| ||||||||    
T  48805 accttgaaaaacttatgaataatacataaaag-ttattaatttgtataagctcgaaaataag 48865  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 178568 - 178504
Alignment:
Q  19 tttttctcataaactaccttgaaaagcgtatgaataatatataaaagtttatttatttgcataag 83  Q
    ||||| ||||||| |||||| | || | ||| ||||||| ||||||| |||||||||||||||||    
T  178568 tttttttcataaaataccttaagaaacttataaataatacataaaagcttatttatttgcataag 178504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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