View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_8 (Length: 592)

Name: NF3296_low_8
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_8
NF3296_low_8
[»] chr5 (6 HSPs)
chr5 (17-573)||(31161505-31162057)
chr5 (286-567)||(31201496-31201777)
chr5 (236-573)||(41349278-41349614)
chr5 (302-461)||(25834799-25834958)
chr5 (18-124)||(41349656-41349762)
chr5 (17-129)||(31201309-31201421)
[»] chr3 (4 HSPs)
chr3 (274-567)||(4314462-4314755)
chr3 (236-573)||(25794131-25794466)
chr3 (31-126)||(4314819-4314914)
chr3 (17-125)||(25793993-25794101)
[»] chr4 (1 HSPs)
chr4 (291-573)||(17183098-17183380)
[»] chr6 (1 HSPs)
chr6 (193-230)||(28757055-28757092)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Original strand, 31161505 - 31162057
Alignment:
Q  17 cacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31161505 cacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgacattgcatccaatgaggta 31161604  T
Q  117 taaatataaaattttaatcttttttt-caatgtattt-attannnnnnnnnnnggtattcggggttcgaacctcgtacacattgtccttaccaactgagt 214  Q
    |||||||||||||||||||||||||| |||||||||| |||            ||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  31161605 taaatataaaattttaatcttttttttcaatgtattttatt------ttttttggtattcggagttcgaatctcgtacgcattgtccttaccaactgagt 31161698  T
Q  215 taagcccatagagacaatgcgtttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacata 314  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161699 taagcccacagagacaatgcgtttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacata 31161798  T
Q  315 tgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161799 tgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatat 31161898  T
Q  415 gaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacctctcacgtgttattgatgtgttttataaagatgaagat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161899 gaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacctctcacgtgttattgatgtgttttataaagatgaagat 31161998  T
Q  515 aactacacgaatcctgaaggagaaatgaaaacattcattaaagctttgcttgtagatcc 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31161999 aactacacgaatcctgaaggagaaatgaaaacattcattaaagctttgcttgtagatcc 31162057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 286 - 567
Target Start/End: Original strand, 31201496 - 31201777
Alignment:
Q  286 tatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaa 385  Q
    |||||||||||||||  ||||||||||| |  ||||||||||||||||||| |||| | | ||||||||||||||||||||| |  |||||||||||| |    
T  31201496 tatatagtttgaacaagaaagagaacatgttacctcattcttggaatgctatatgaggcaatataatgtctctagggaagctgccattcaagaaggtcga 31201595  T
Q  386 aagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacctctcacgtg 485  Q
    || || |||||  ||||||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||||||||||||||||| |||| || ||||||     
T  31201596 aatagaattgctgatgcttggaaagatatgaataaggaatgttttagaccaactgaagttccaatgccttttcttacacgcattctaaatctgtcacgtt 31201695  T
Q  486 ttattgatgtgttttataaagatgaagataactacacgaatcctgaaggagaaatgaaaacattcattaaagctttgcttgt 567  Q
    |||| |||||  ||||||||||| ||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||    
T  31201696 ttatggatgtcgtttataaagataaagataacttcactcatcctgcaggagaaatgaaaacattcatcaaagcattgcttgt 31201777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 236 - 573
Target Start/End: Complemental strand, 41349614 - 41349278
Alignment:
Q  236 tttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgct 335  Q
    |||||||| ||||||  || || || |||||| |||| |||||||  ||| |||||||||||||| |||||||||||| | |||||||||||||||||||    
T  41349614 tttgtttttattcaaatgatgtgaacatttacatgaagtattattt-ttgcatatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgct 41349516  T
Q  336 acatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggcc 435  Q
    | |||| | | |||||| ||||||| |||| | |  |||||||||||| |||||| ||||   |||||||||||||||| |||||  ||||||||| | |    
T  41349515 atatgaggcaatataatatctctagagaagttgccattcaagaaggtcgaaagagaattgtagatgcttggaaagatattaataaagaatgtcttatgtc 41349416  T
Q  436 aacagaaattccaatgccttttcttacacgcattttaaacctctcacgtgttattgatgtgttttataaagatgaagataactacacgaatcctgaagga 535  Q
    ||| ||  || ||||||||||||| |  |||||| ||||| | |||||| | || |||||| ||||||||||| |||||||||  ||  |||||||||||    
T  41349415 aaccgaggtttcaatgccttttctgatgcgcattctaaacttatcacgtttcatggatgtggtttataaagataaagataactttacacatcctgaagga 41349316  T
Q  536 gaaatgaaaacattcattaaagctttgcttgtagatcc 573  Q
    ||||||||  ||||||||||| |||| ||||| |||||    
T  41349315 gaaatgaagtcattcattaaatctttacttgttgatcc 41349278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 302 - 461
Target Start/End: Original strand, 25834799 - 25834958
Alignment:
Q  302 aaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatg 401  Q
    |||||||||||| | | |||||| ||||| |||||||||||| ||||| || | |||||||||||| |  |||||||| | || ||| | ||||| | ||    
T  25834799 aaaagagaacatgtttgctcattgttggattgctacatgaagcagtatgatatgtctagggaagctgctattcaagaatgccataagggaattgcaattg 25834898  T
Q  402 cttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttctta 461  Q
    ||||||||||||| ||| || ||||||||||||||||  || ||||||||||||||||||    
T  25834899 cttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgccttttctta 25834958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 41349762 - 41349656
Alignment:
Q  18 acagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtat 117  Q
    |||||||| ||  |||| ||||||||||||||  |||||||| ||||||||||||||||  || ||||||||||||||||||||| |||||| |||||||    
T  41349762 acagaggacatattcaaatgggtatcaaatgagtcaaaaattattaatgctgctattgtcctttgcaggataatggatgatattgtatccaacgaggtat 41349663  T
Q  118 aaatata 124  Q
    | |||||    
T  41349662 atatata 41349656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 31201309 - 31201421
Alignment:
Q  17 cacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggta 116  Q
    ||||||||| ||| |||||||||||||||||||  ||||| || |||||||||| ||| | ||||| ||| |||||||||| ||||  ||||||||||||    
T  31201309 cacagaggacatcttcaagtgggtatcaaatgatccaaaagttattaatgctgcaattatcattggaaggttaatggatgacattgtgtccaatgaggta 31201408  T
Q  117 taaatataaaatt 129  Q
     | ||||||||||    
T  31201409 catatataaaatt 31201421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 274 - 567
Target Start/End: Complemental strand, 4314755 - 4314462
Alignment:
Q  274 tattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagtt 373  Q
    ||||||| |||| |||||||||||| | |||||||| ||| | || ||||||||||||||||| |||||| |  ||||| ||||||| |||| | |  ||    
T  4314755 tattatttgttgcatatagtttgaataaaaaagagatcatgtttcttcattcttggaatgctatatgaagcaacataatatctctagagaaggtgccatt 4314656  T
Q  374 caagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaa 473  Q
    |||||||||| ||| || ||||   ||||||||||||||||||||||| ||||||||| ||| || ||| |||||||||||||| | ||  |||||||||    
T  4314655 caagaaggtcgaaaaagaattgttgatgcttggaaagatatgaataaggaatgtcttatgccgactgaagttccaatgccttttttgacgtgcattttaa 4314556  T
Q  474 acctctcacgtgttattgatgtgttttataaagatgaagataactacacgaatcctgaaggagaaatgaaaacattcattaaagctttgcttgt 567  Q
    || | |||||  | || |||||| ||||||| ||| ||||||||| |||  |||| |||||||||||||| |||||||| ||| |||| |||||    
T  4314555 acttatcacgcttgatggatgtggtttataatgataaagataacttcactcatccagaaggagaaatgaagacattcatcaaatctttacttgt 4314462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 236 - 573
Target Start/End: Original strand, 25794131 - 25794466
Alignment:
Q  236 tttgttttaattcaatggaagtaaaaatttacttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgct 335  Q
    |||||||||||||||  || ||| | |||||| |||||||||  | ||||   |||||||||||| |||||||||||| | ||||||||| |||| || |    
T  25794131 tttgttttaattcaaatgatgtagacatttacatgaattatttcttgttg--catagtttgaacaaaaaagagaacatgtttcctcattcctggagtgtt 25794228  T
Q  336 acatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggcc 435  Q
    | |||||  | ||| |||| |||||||||||| |  |||||||||| | |||||| |||    |||||||||||||||| ||| |  ||||||||| |||    
T  25794229 atatgaaagaatatgatgtgtctagggaagctgccattcaagaaggccgaaagagaattcttgatgcttggaaagatataaatgaagaatgtcttatgcc 25794328  T
Q  436 aacagaaattccaatgccttttcttacacgcattttaaacctctcacgtgttattgatgtgttttataaagatgaagataactacacgaatcctgaagga 535  Q
    ||| ||| |||| |||  |||| | | |||||||||| |||| || ||| |||| || ||  ||||||||||| ||||||||| |||  |  ||||||||    
T  25794329 aactgaagttcctatgaattttgtgagacgcattttagacctatcgcgttttatggacgtagtttataaagataaagataacttcactcacactgaagga 25794428  T
Q  536 gaaatgaaaacattcattaaagctttgcttgtagatcc 573  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25794429 gaaatgaagacattcattaaagctttgcttgtagatcc 25794466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 4314914 - 4314819
Alignment:
Q  31 tcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggtataaatataaa 126  Q
    |||||||||||||||||| || ||||||  | |||||||||||| |  || ||||| |||||||||||||||||||||| ||||||| || |||||    
T  4314914 tcaagtgggtatcaaatggaataaaaatgatcaatgctgctattatcctttgcaggctaatggatgatattgcatccaacgaggtatgaagataaa 4314819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 25793993 - 25794101
Alignment:
Q  17 cacagaggagatcatcaagtgggtatcaaatgaaacaaaaattgttaatgctgctattgttattggcaggataatggatgatattgcatccaatgaggta 116  Q
    |||||| || ||| |||||||| ||||||||||  |||||||| |||||||| || ||||  || ||||| |||||||||| ||||  ||||||||||||    
T  25793993 cacagaagacatcttcaagtggatatcaaatgagccaaaaattcttaatgcttctgttgtactttgcaggctaatggatgacattgtgtccaatgaggta 25794092  T
Q  117 taaatataa 125  Q
    || ||||||    
T  25794093 tatatataa 25794101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 291 - 573
Target Start/End: Original strand, 17183098 - 17183380
Alignment:
Q  291 agtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagag 390  Q
    |||||||||| ||||||| |||| | |||||||||||||||||||| |||||| | || ||| | ||||| ||||||||  |||||||| | ||||| ||    
T  17183098 agtttgaacataaaagaggacatgtttcctcattcttggaatgctatatgaaggaatacaatatatctagagaagcttctattcaagaatgccaaaaaag 17183197  T
Q  391 gattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacctctcacgtgttatt 490  Q
      |||  ||||||||||||||||| ||| |  ||||||||| ||||||  || |||||| || |||||| || |||||| | || ||||| ||| ||||     
T  17183198 agttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgctttttctaactcgcattgtcaatctctcgcgttttatg 17183297  T
Q  491 gatgtgttttataaagatgaagataactacacgaatcctgaaggagaaatgaaaacattcattaaagctttgcttgtagatcc 573  Q
    |||||  |||||||  ||||||| ||||||||| || || ||||||||||||| |||| ||||||||||||||||||||||||    
T  17183298 gatgtaatttataagcatgaagacaactacacgcattctaaaggagaaatgaagacatacattaaagctttgcttgtagatcc 17183380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 28757055 - 28757092
Alignment:
Q  193 acattgtccttaccaactgagttaagcccatagagaca 230  Q
    ||||||||||||||||||||||||||| || |||||||    
T  28757055 acattgtccttaccaactgagttaagctcacagagaca 28757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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