View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_80 (Length: 238)
Name: NF3296_low_80
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_80 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12513752 - 12513532
Alignment:
| Q |
1 |
cttaagtactggttgtgaacttggtcgtccaaatattccttaatagatagatctctttatgcttttgctttcatatggaaagcaaagaaactgctgggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12513752 |
cttaagtactggttgtgaacttggtcgtccaaatattccttaatagatagatctctttatgcttttgctttcatatggaaagcaaagaaactgctgggag |
12513653 |
T |
|
| Q |
101 |
aatatccttaactgtcaatcatgcaattaaagcatgtttggtagaattgttgctgaagcactccaacaatacaaaccacctttaatactcttcaataaac |
200 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12513652 |
aatagccttaattgtcaatcatgcaattaaagcatgtctggtagaattgttgctgaagcactccaacaatacaaaccacctttaatactcttcaataaac |
12513553 |
T |
|
| Q |
201 |
ctaacaataatacttcctaaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
12513552 |
ctaacaataatacttcctaaa |
12513532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 32283059 - 32282848
Alignment:
| Q |
10 |
tggttgtgaacttggtcgtccaaatattccttaatagatagatctctttatgcttttgctttcatatggaaagcaaagaaactgctgggagaatatcctt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
32283059 |
tggttttgaacttggtcgtccaaatattccttaatagatagatctctttatgcttttgctttcatatggaaagcaaagaaactgttgggagaatagcctt |
32282960 |
T |
|
| Q |
110 |
aactgtcaatcatgcaattaaagcatgtttggtagaattgttgctgaagcactccaacaatacaaaccacctttaatactcttcaataaacctaacaata |
209 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32282959 |
aactgtcaatcatgcaattaaagcatgtctggtagaattgttgttgaagcgctccaacaatacaaaccacctttaatacttttcaataaacctaacaata |
32282860 |
T |
|
| Q |
210 |
atacttcctaaa |
221 |
Q |
| |
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|||||||||||| |
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| T |
32282859 |
atacttcctaaa |
32282848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 15702294 - 15702083
Alignment:
| Q |
10 |
tggttgtgaacttggtcgtccaaatattccttaatagatagatctctttatgcttttgctttcatatggaaagcaaagaaactgctgggagaatatcctt |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
15702294 |
tggttttgaacttggtcgtccaaatattccttaatagatagatctctttatgcttttgctttcatatggaaagcaaagaaactgttgggagaatagcctt |
15702195 |
T |
|
| Q |
110 |
aactgtcaatcatgcaattaaagcatgtttggtagaattgttgctgaagcactccaacaatacaaaccacctttaatactcttcaataaacctaacaata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15702194 |
aactgtcaatcatgcaattaaagcatgtctggtagaattgttgttgaagcgctccaacaatacaaaccacctttaatacttttcaataaacctaacaata |
15702095 |
T |
|
| Q |
210 |
atacttcctaaa |
221 |
Q |
| |
|
|||||||||||| |
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|
| T |
15702094 |
atacttcctaaa |
15702083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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