View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_81 (Length: 237)

Name: NF3296_low_81
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_81
NF3296_low_81
[»] chr4 (1 HSPs)
chr4 (123-160)||(9644839-9644876)
[»] chr7 (2 HSPs)
chr7 (1-46)||(20276589-20276635)
chr7 (115-168)||(21733142-21733195)
[»] chr5 (3 HSPs)
chr5 (115-168)||(2961081-2961134)
chr5 (115-168)||(2969549-2969602)
chr5 (123-163)||(38953854-38953894)
[»] chr3 (2 HSPs)
chr3 (115-168)||(6954071-6954124)
chr3 (115-160)||(45567482-45567527)
[»] chr2 (2 HSPs)
chr2 (115-160)||(31556821-31556866)
chr2 (115-168)||(40657487-40657540)


Alignment Details
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 9644839 - 9644876
Alignment:
Q  123 ttttagtccatttacatataaatttttaagctttaaat 160  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  9644839 ttttagtccatttacatatgaatttttaagctttaaat 9644876  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20276589 - 20276635
Alignment:
Q  1 tagatcgtgtgtgcggacg-ttgggaggatgatgatattttagcaaa 46  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||    
T  20276589 tagatcgtgtgtgatgacggttgggaggatgatgatattttagcaaa 20276635  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 21733142 - 21733195
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaatataatatt 168  Q
    ||||||| |||| |||||||| |||||| ||||| |||||| ||||||||||||    
T  21733142 tttggtcctttttgtccattttcatatacattttcaagcttaaaatataatatt 21733195  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 2961134 - 2961081
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaatataatatt 168  Q
    ||||||| |||| ||||||||  |||||||||||||||||| |||| |||||||    
T  2961134 tttggtcctttttgtccatttttatataaatttttaagcttcaaatctaatatt 2961081  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 2969602 - 2969549
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaatataatatt 168  Q
    ||||||| |||| ||||||||  |||||||||||||||||| |||| |||||||    
T  2969602 tttggtcctttttgtccatttttatataaatttttaagcttcaaatctaatatt 2969549  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 38953894 - 38953854
Alignment:
Q  123 ttttagtccatttacatataaatttttaagctttaaatata 163  Q
    ||||||||| ||||||||| ||||||||| |||||||||||    
T  38953894 ttttagtccgtttacatatgaatttttaaactttaaatata 38953854  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 6954071 - 6954124
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaatataatatt 168  Q
    ||||||| ||||||||||||| |||||| ||||| |||||| |||| |||||||    
T  6954071 tttggtccttttagtccattttcatatacattttcaagcttcaaatctaatatt 6954124  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 45567482 - 45567527
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaat 160  Q
    ||||||| |||| |||||||| ||||||||||||||||||| ||||    
T  45567482 tttggtcctttttgtccattttcatataaatttttaagcttaaaat 45567527  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 31556821 - 31556866
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaat 160  Q
    ||||||| |||| |||||||| ||||||||||||||||||| ||||    
T  31556821 tttggtcctttttgtccattttcatataaatttttaagcttaaaat 31556866  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 40657540 - 40657487
Alignment:
Q  115 tttggtcgttttagtccatttacatataaatttttaagctttaaatataatatt 168  Q
    ||||||| |||| |||||||| |||||| ||||| |||||| ||||||||||||    
T  40657540 tttggtcctttttgtccattttcatatacattttcaagcttcaaatataatatt 40657487  T

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