View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_85 (Length: 224)
Name: NF3296_low_85
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_85 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4638214 - 4638133
Alignment:
| Q |
1 |
ttgtgctgcgtacgttttttatcttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttggtgc |
82 |
Q |
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| T |
4638214 |
ttgtgctgagtatgttttttatcttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttggtgc |
4638133 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 4638053 - 4638001
Alignment:
| Q |
162 |
atgaatgttggataatgtttctaaaaattgatttatatgtttttgggtctgtg |
214 |
Q |
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| T |
4638053 |
atgaatgttggataatgtttcttaaaattgatttatatgtttttgggtctgtg |
4638001 |
T |
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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 27261434 - 27261387
Alignment:
| Q |
162 |
atgaatgttggataatgtttctaaaaattgatttatatgtttttgggt |
209 |
Q |
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| T |
27261434 |
atgagtgttggttaatgttttttaaaattgatttatatgtttttgggt |
27261387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 12808346 - 12808403
Alignment:
| Q |
21 |
atcttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttg |
78 |
Q |
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| T |
12808346 |
atcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttg |
12808403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 2634238 - 2634181
Alignment:
| Q |
21 |
atcttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttg |
78 |
Q |
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| T |
2634238 |
atcttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttg |
2634181 |
T |
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Target: scaffold0103 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 5773 - 5828
Alignment:
| Q |
23 |
cttcttctgcaggtttcttggtcatcaagcataaggttttgtgattctgggagttg |
78 |
Q |
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| T |
5773 |
cttcttctgcaggtttcttggttgtcaagcataagggtttgtgattcttggagttg |
5828 |
T |
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