View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3296_low_86 (Length: 223)

Name: NF3296_low_86
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3296_low_86
NF3296_low_86
[»] chr4 (13 HSPs)
chr4 (7-181)||(55132309-55132483)
chr4 (59-144)||(8755906-8755991)
chr4 (78-143)||(11839848-11839913)
chr4 (86-135)||(1758387-1758436)
chr4 (78-144)||(13834406-13834472)
chr4 (51-133)||(47097417-47097499)
chr4 (78-135)||(9297439-9297496)
chr4 (76-129)||(14945563-14945616)
chr4 (78-135)||(26499422-26499479)
chr4 (50-143)||(38080869-38080962)
chr4 (78-145)||(17381511-17381578)
chr4 (50-128)||(40407571-40407649)
chr4 (50-130)||(38932750-38932830)
[»] chr6 (7 HSPs)
chr6 (48-143)||(17848759-17848854)
chr6 (78-144)||(6524981-6525047)
chr6 (78-144)||(25085046-25085112)
chr6 (78-144)||(21021054-21021120)
chr6 (80-145)||(10219615-10219680)
chr6 (87-144)||(28995505-28995562)
chr6 (78-130)||(26293512-26293564)
[»] chr3 (3 HSPs)
chr3 (51-142)||(46008606-46008697)
chr3 (76-145)||(14984484-14984553)
chr3 (76-112)||(34293951-34293987)
[»] chr7 (8 HSPs)
chr7 (78-145)||(40355031-40355098)
chr7 (78-138)||(39608400-39608460)
chr7 (51-138)||(18942823-18942910)
chr7 (78-129)||(25689096-25689147)
chr7 (78-144)||(19303520-19303586)
chr7 (53-133)||(5198019-5198099)
chr7 (76-144)||(27080834-27080902)
chr7 (76-144)||(27197399-27197467)
[»] scaffold0252 (1 HSPs)
scaffold0252 (50-131)||(17181-17262)
[»] chr8 (5 HSPs)
chr8 (50-143)||(33590207-33590300)
chr8 (86-144)||(7680979-7681037)
chr8 (43-144)||(13002976-13003077)
chr8 (85-125)||(4493044-4493084)
chr8 (113-145)||(28929521-28929553)
[»] chr5 (3 HSPs)
chr5 (76-144)||(39194879-39194947)
chr5 (50-110)||(11497959-11498019)
chr5 (50-110)||(11534899-11534959)
[»] chr1 (5 HSPs)
chr1 (86-142)||(5529839-5529895)
chr1 (78-133)||(9890610-9890665)
chr1 (77-144)||(30050554-30050621)
chr1 (7-110)||(6541117-6541216)
chr1 (78-130)||(12238414-12238466)
[»] chr2 (4 HSPs)
chr2 (78-145)||(40124342-40124409)
chr2 (78-136)||(33260998-33261056)
chr2 (78-135)||(41746414-41746471)
chr2 (86-138)||(21603496-21603548)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 55132483 - 55132309
Alignment:
Q  7 gactgaaatgaaaataagtaagtacttttattaaatgactaatgtgacaataaataattacattaaacaattaatatggcaatattaacgaagtatttta 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  55132483 gactgaaatcaaaataagtaagtacttttattaaatgactaatatgacaataaataattacattaaaggattaatatggcaatattaacgaagtatttta 55132384  T
Q  107 atgtaaatgaccattttgactaacgaagtgcataatcagcactacaagaaattaggtagatagtcaggggcagaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  55132383 atgtaaatgaccattttgactaacgaagtgcataatcagcactacaagaaatctggtagttagtcaggggcagaa 55132309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 8755906 - 8755991
Alignment:
Q  59 aataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||| || ||||||  ||||||||| ||||||||||||||||||||||||| |  ||| ||||||| ||||||||||||||||||    
T  8755906 aataagtatattaaaggattaatatgacaatattaacgaagtattttaatgttagagactattttgattaacgaagtgcataatca 8755991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 11839913 - 11839848
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatc 143  Q
    ||||||| ||||||||||||||||||||||||| || ||| |||||||||||||| ||||| ||||    
T  11839913 taatatgacaatattaacgaagtattttaatgtcaaggactattttgactaacgaggtgcacaatc 11839848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 1758436 - 1758387
Alignment:
Q  86 caatattaacgaagtattttaatgtaaatgaccattttgactaacgaagt 135  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  1758436 caatattaacgaagtattttaatgtcaaggactattttgactaacgaagt 1758387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 13834472 - 13834406
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||||| |||||||||| || ||||||||||| || ||| |||||||||||| ||||||| |||||    
T  13834472 taatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatca 13834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 47097417 - 47097499
Alignment:
Q  51 tgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaa 133  Q
    ||||||||||||| || ||||||  | ||||||| |||||||||  |||||||||| ||| || ||| |||||||||||||||    
T  47097417 tgacaataaataagtatattaaaggactaatatgacaatattaataaagtattttagtgttaaagactattttgactaacgaa 47097499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 9297496 - 9297439
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagt 135  Q
    ||||||| |||||||||| |||||||||||||| ||| || |||||||||||| ||||    
T  9297496 taatatgacaatattaacaaagtattttaatgtcaataacaattttgactaacaaagt 9297439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 14945563 - 14945616
Alignment:
Q  76 attaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaa 129  Q
    ||||||||| |||||||||| ||  ||||||||||||||||| |||||||||||    
T  14945563 attaatatgacaatattaactaatcattttaatgtaaatgactattttgactaa 14945616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 26499422 - 26499479
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagt 135  Q
    ||||||| ||||||||| ||||||||||||||| |  ||| |||||||||||||||||    
T  26499422 taatatgacaatattaatgaagtattttaatgttacggactattttgactaacgaagt 26499479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 38080869 - 38080962
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatc 143  Q
    |||||||||||||| || ||| ||  | ||||||| | |||||||| |||||||||||||| |   || ||||||||||||||| |||||||||    
T  38080869 gtgacaataaataagtatattgaagtactaatatgactatattaacaaagtattttaatgttacaaactattttgactaacgaaatgcataatc 38080962  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 17381511 - 17381578
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatcag 145  Q
    ||||||| ||||||||||||| ||||||||| | || ||| ||||||| |||| ||||||| ||||||    
T  17381511 taatatgacaatattaacgaaatattttaatatcaaggactattttgattaacaaagtgcacaatcag 17381578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 40407571 - 40407649
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgacta 128  Q
    |||||||||| |||||| ||||||  || ||||||  ||||||||| || ||||||||||| |||| | ||||||||||    
T  40407571 gtgacaataagtaattatattaaaagatcaatatgataatattaacaaattattttaatgttaatggcaattttgacta 40407649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 38932750 - 38932830
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaac 130  Q
    |||||||||||||| || ||| ||  | ||||||| ||||||||| ||| ||||||||||| |  ||| ||||||||||||    
T  38932750 gtgacaataaataagtatattgaaggactaatatgacaatattaatgaaatattttaatgttagagactattttgactaac 38932830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 17848759 - 17848854
Alignment:
Q  48 atgtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatc 143  Q
    |||||||||||| ||| || || |||  | ||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||| |||| ||||    
T  17848759 atgtgacaataagtaagtatatcaaatgactaatatgtcaatattaacgaagtattttaatgttaaagactattttgactaacgaaatgcacaatc 17848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 6524981 - 6525047
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||||| ||||||||| ||||||||||||||| |  ||| |||||||| ||||||||| |||||||    
T  6524981 taatatgacaatattaatgaagtattttaatgttacggactattttgacaaacgaagtgtataatca 6525047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 25085046 - 25085112
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||||| |||||||||| || ||||||||||| || ||| |||||||||||| ||||||| |||||    
T  25085046 taatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatca 25085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 21021054 - 21021120
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    |||||||  |||| ||||||| ||||||||||| |||||| |||||||||||  || ||||||||||    
T  21021054 taatatgataataataacgaaatattttaatgttaatgactattttgactaataaaatgcataatca 21021120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 10219680 - 10219615
Alignment:
Q  80 atatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatcag 145  Q
    ||||| ||||||||||||| |||||||| || |  ||| |||||||||||| ||||||| ||||||    
T  10219680 atatgacaatattaacgaattattttaacgtcagagactattttgactaacaaagtgcacaatcag 10219615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 28995505 - 28995562
Alignment:
Q  87 aatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    |||||||||||||||||||||||| |   || |||||||||||||||||  |||||||    
T  28995505 aatattaacgaagtattttaatgttagaaactattttgactaacgaagtaaataatca 28995562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 26293512 - 26293564
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaac 130  Q
    |||||||  ||||||||| |||||||||||||| || ||| ||||||||||||    
T  26293512 taatatgataatattaacaaagtattttaatgttaaggactattttgactaac 26293564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 46008697 - 46008606
Alignment:
Q  51 tgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataat 142  Q
    ||||||||||||| || ||||||  ||||||||| ||||||||||||| ||||||||||| || ||| ||||| |||||| || ||||||||    
T  46008697 tgacaataaataagtatattaaaagattaatatgacaatattaacgaattattttaatgttaaagactattttaactaacaaaatgcataat 46008606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 14984553 - 14984484
Alignment:
Q  76 attaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatcag 145  Q
    ||||||||| ||||||||||||| ||||||||||| |   || |||||||||||||||||||| ||||||    
T  14984553 attaatatgacaatattaacgaaatattttaatgtcaggaactattttgactaacgaagtgcacaatcag 14984484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 34293987 - 34293951
Alignment:
Q  76 attaatatggcaatattaacgaagtattttaatgtaa 112  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  34293987 attaatatgacaatattaacgaagtattttattgtaa 34293951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 40355031 - 40355098
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatcag 145  Q
    ||||||| ||||||||| ||||| |||||||||||||||| ||||||||||||  |||||| ||||||    
T  40355031 taatatgacaatattaatgaagtgttttaatgtaaatgactattttgactaacatagtgcacaatcag 40355098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 39608460 - 39608400
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgca 138  Q
    ||||||| |||||||||  |||||||||||||||| | || ||||| ||||||||||||||    
T  39608460 taatatgacaatattaatcaagtattttaatgtaagtaactattttaactaacgaagtgca 39608400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 18942910 - 18942823
Alignment:
Q  51 tgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgca 138  Q
    ||||||||| ||| || ||| ||  ||||||||| |||||||||||| |||||||||||| |  ||| |||| |||||||||| ||||    
T  18942910 tgacaataagtaagtatattgaatgattaatatgacaatattaacgacgtattttaatgttagagactatttggactaacgaaatgca 18942823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 25689096 - 25689147
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaa 129  Q
    ||||||| |||||||||||||||||| |||||| |||||  |||||||||||    
T  25689096 taatatgacaatattaacgaagtattctaatgttaatgattattttgactaa 25689147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 19303520 - 19303586
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||||| |||||||||| || |||| |||||| |||||  |||||||||||||||||  |||||||    
T  19303520 taatatgacaatattaacaaaatattctaatgttaatgattattttgactaacgaagttaataatca 19303586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 5198019 - 5198099
Alignment:
Q  53 acaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaa 133  Q
    ||||||||||| || ||| ||  | ||||||| ||||||||| ||||||||||||||| |  ||  |||||||||||||||    
T  5198019 acaataaataagtatattgaaagactaatatgacaatattaatgaagtattttaatgttagagattattttgactaacgaa 5198099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 27080902 - 27080834
Alignment:
Q  76 attaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    |||||||||  |||||||| ||||||||||||||| |  ||| |||||||||| || |||||| |||||    
T  27080902 attaatatgataatattaaagaagtattttaatgttatggactattttgactagcgtagtgcacaatca 27080834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 27197399 - 27197467
Alignment:
Q  76 attaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    |||||||||  |||||||| ||||||||||||||| |  ||| |||||||||| || |||||| |||||    
T  27197399 attaatatgataatattaaagaagtattttaatgttatggactattttgactagcgtagtgcacaatca 27197467  T

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Target: scaffold0252 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 17262 - 17181
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacg 131  Q
    |||||||||||||| || ||| ||  | || |||| ||||||||||||||||||||||||| |  ||| |||||||||||||    
T  17262 gtgacaataaataagtatattgaaatactagtatgacaatattaacgaagtattttaatgttatggactattttgactaacg 17181  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 33590207 - 33590300
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatc 143  Q
    |||||||||| |||||| ||| || |||  ||||| ||||||||||||||||||||||||| |  ||  |||||||||||| || || ||||||    
T  33590207 gtgacaataattaattatattgaagaatcgatatgacaatattaacgaagtattttaatgttagggattattttgactaacaaaatgtataatc 33590300  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 7680979 - 7681037
Alignment:
Q  86 caatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||||||||||| ||||||||||| |  ||| ||||||||||||||| |||| |||||    
T  7680979 caatattaacgaattattttaatgttagggacgattttgactaacgaaatgcacaatca 7681037  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 13003077 - 13002976
Alignment:
Q  43 gactaatgtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataat 142  Q
    ||||||| ||||||||| ||| ||||||||   ||||||||  ||||||||| | |  ||||||||||||   || ||||||||||||  ||||||||||    
T  13003077 gactaatatgacaataagtaagtacattaagggattaatataacaatattaatgcaacattttaatgtaagaaacaattttgactaacatagtgcataat 13002978  T
Q  143 ca 144  Q
    ||    
T  13002977 ca 13002976  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 4493084 - 4493044
Alignment:
Q  85 gcaatattaacgaagtattttaatgtaaatgaccattttga 125  Q
    ||||||||||| |||||||||||||| |||||| |||||||    
T  4493084 gcaatattaacaaagtattttaatgtcaatgactattttga 4493044  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 28929521 - 28929553
Alignment:
Q  113 atgaccattttgactaacgaagtgcataatcag 145  Q
    ||||| |||||||||||||||||||||||||||    
T  28929521 atgactattttgactaacgaagtgcataatcag 28929553  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 39194947 - 39194879
Alignment:
Q  76 attaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    ||||||||| |||||||||||||  |||||||||  | |||| |||||||||||| ||||||| |||||    
T  39194947 attaatatgacaatattaacgaaacattttaatggcagtgactattttgactaacaaagtgcacaatca 39194879  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 11497959 - 11498019
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgt 110  Q
    |||||||||| ||| || ||||||  ||||||||| |||||||||| || |||||||||||    
T  11497959 gtgacaataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgt 11498019  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 11534899 - 11534959
Alignment:
Q  50 gtgacaataaataattacattaaacaattaatatggcaatattaacgaagtattttaatgt 110  Q
    |||||||||| ||| || ||||||  ||||||||| |||||||||| || |||||||||||    
T  11534899 gtgacaataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgt 11534959  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 5529839 - 5529895
Alignment:
Q  86 caatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataat 142  Q
    ||||||||||||||||||||||||| |   || |||||||||||| |||||||||||    
T  5529839 caatattaacgaagtattttaatgtcagaaactattttgactaacaaagtgcataat 5529895  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 9890665 - 9890610
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaa 133  Q
    ||||||| |||||||||||||||||| |||||| || ||  |||||||||||||||    
T  9890665 taatatgacaatattaacgaagtattctaatgttaaggattattttgactaacgaa 9890610  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 30050554 - 30050621
Alignment:
Q  77 ttaatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatca 144  Q
    |||||||| ||||||||||||  ||||||||||| |  ||| |||||||||||| || ||||||||||    
T  30050554 ttaatatgtcaatattaacgagatattttaatgtgagagactattttgactaacaaattgcataatca 30050621  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 6541216 - 6541117
Alignment:
Q  7 gactgaaatgaaaataagtaagtacttttattaaatgactaatgtgacaataaataattacattaaacaattaatatggcaatattaacgaagtatttta 106  Q
    ||||||||||| ||||||||||||  ||||| ||  |||| || ||||||||| ||| || ||| ||  | ||||||| ||||||||||||| |||||||    
T  6541216 gactgaaatgacaataagtaagta--tttataaa--gactgatatgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatatttta 6541121  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 12238466 - 12238414
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaac 130  Q
    ||||||| |||||||||||||  ||||||| | ||||||| ||||||||||||    
T  12238466 taatatgacaatattaacgaaacattttaacgcaaatgactattttgactaac 12238414  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 40124409 - 40124342
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgcataatcag 145  Q
    ||||||| ||||||||| |||||| |||||||| |  ||| ||||||||||||| |||||| ||||||    
T  40124409 taatatgacaatattaatgaagtactttaatgttatggactattttgactaacggagtgcacaatcag 40124342  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 33261056 - 33260998
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtg 136  Q
    ||||||| |||||| |||||| ||||||| ||| || ||| ||||||||||||||||||    
T  33261056 taatatgacaatatcaacgaaatattttactgtcaaagactattttgactaacgaagtg 33260998  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 41746471 - 41746414
Alignment:
Q  78 taatatggcaatattaacgaagtattttaatgtaaatgaccattttgactaacgaagt 135  Q
    ||||||| ||||||||| ||||||||||||||| |  ||| ||||||| |||||||||    
T  41746471 taatatgacaatattaatgaagtattttaatgttagagactattttgaataacgaagt 41746414  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 21603548 - 21603496
Alignment:
Q  86 caatattaacgaagtattttaatgtaaatgaccattttgactaacgaagtgca 138  Q
    ||||||||||||| ||||||||| | || ||| |||||||||||| |||||||    
T  21603548 caatattaacgaaatattttaatatcaaagactattttgactaacaaagtgca 21603496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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