View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_87 (Length: 222)
Name: NF3296_low_87
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 42038526 - 42038721
Alignment:
| Q |
9 |
gagcagaacctgtggagccaggcctagcaatgtacaaacagaaacgtttggttagacgtgtgattgaggaatcaggtgtaccatacacctacatctgctg |
108 |
Q |
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| T |
42038526 |
gagcagatcctgtggagccaggccttgcaatgtacaaacagaaacgtttggttagacgtgtgattgaggaatcaggtgtaccatacacctacatctgctg |
42038625 |
T |
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| Q |
109 |
caactccattgcatcttggccatactatgacaattgtcatccatcacagcttcctccaccgttggatcaattgcacatctatggtcatggcaatgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038626 |
caactccattgcatcttggccatactatgacaattgtcatccatcacagcttcctccaccgttggatcaattgcacatctatggtcatggcaatgt |
42038721 |
T |
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