View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3296_low_88 (Length: 213)
Name: NF3296_low_88
Description: NF3296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3296_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44959894 - 44959814
Alignment:
| Q |
1 |
ggaatatcaatatgaatatgaatatgaatgaaggacatttgagtatgcttgctggtcttagtccttatcgtccggtttccg |
81 |
Q |
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| T |
44959894 |
ggaatatcaatatgaatatgaatatgaatgaaggacatttgagtatgcttgctggtcttagtccttatcgtccggtttccg |
44959814 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 44959762 - 44959697
Alignment:
| Q |
133 |
gcagtggtagccatgaacacgatgatcgacatgataattaatcacagctcctacaagatcatcatc |
198 |
Q |
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| T |
44959762 |
gcagtggtagccatgaacacgatgatcgacatgataattaatcacagctcctacaagatcatcatc |
44959697 |
T |
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