View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3297_low_2 (Length: 370)
Name: NF3297_low_2
Description: NF3297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3297_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 45 - 353
Target Start/End: Original strand, 35005519 - 35005827
Alignment:
| Q |
45 |
catttggttgatagggtccaattcctgttcggaagtggttctttgctaaacacactcaataccactgttctctttatgagtggaaggtggagccgattct |
144 |
Q |
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| T |
35005519 |
catttggttgatagggtccaattcctgttcggaagtggttctttgctaaacacactcaataccactgttctctttatgagtggaaggtggagccgattct |
35005618 |
T |
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| Q |
145 |
ttgttggcgcgagtagggttttgtgtgctgggcatagatgcatttgatctgtgctttgtgcgtttgggtgggccctagatttctgcggtccttctgcttg |
244 |
Q |
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| T |
35005619 |
ttgttggcacgagtagggttttgtgtgctgggcatagatggatttgatctgtgctttgtgcgtttgggtgggccctagatttctgcggtccttctgcttg |
35005718 |
T |
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| Q |
245 |
gtggttttctcttggctttgctgcttctggtagtgctggcggggtggagcttttggagtgcttttgttgtggatgttcctaggggtgccgttttagtttt |
344 |
Q |
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| T |
35005719 |
gtggttttctcttggctttgctgcttctggtagtgctggcgggggggaggttttggagtgcttttgttgtggatgttcctaggggtgccattttagtttt |
35005818 |
T |
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| Q |
345 |
ggcttcttg |
353 |
Q |
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| T |
35005819 |
ggcttcttg |
35005827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 8766105 - 8766190
Alignment:
| Q |
75 |
ggaagtggttctttgctaaacacactcaataccactgttctctttatgagtggaaggtggagccgattctttgttggcgcgagtag |
160 |
Q |
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| T |
8766105 |
ggaattggttcattgctaaacacccttcacactagtgttcattttatgagtggaaggtggagtcaattctttgttggcgccagtag |
8766190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 9500222 - 9500254
Alignment:
| Q |
117 |
tttatgagtggaaggtggagccgattctttgtt |
149 |
Q |
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| T |
9500222 |
tttatgagtggaaggtggagccaattctttgtt |
9500254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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