View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3297_low_4 (Length: 255)

Name: NF3297_low_4
Description: NF3297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3297_low_4
NF3297_low_4
[»] chr4 (5 HSPs)
chr4 (19-244)||(223446-223668)
chr4 (59-187)||(48638521-48638649)
chr4 (51-94)||(9898665-9898708)
chr4 (51-94)||(36655010-36655053)
chr4 (51-126)||(43497164-43497239)
[»] chr5 (1 HSPs)
chr5 (59-187)||(26371111-26371239)
[»] chr3 (3 HSPs)
chr3 (59-187)||(17915280-17915408)
chr3 (59-187)||(15027882-15028010)
chr3 (51-187)||(15425822-15425958)
[»] chr8 (2 HSPs)
chr8 (59-187)||(25585968-25586096)
chr8 (51-109)||(13091932-13091990)
[»] chr7 (2 HSPs)
chr7 (21-189)||(19322020-19322188)
chr7 (19-82)||(18306895-18306958)
[»] chr6 (2 HSPs)
chr6 (59-187)||(12061198-12061325)
chr6 (59-187)||(20617985-20618112)
[»] scaffold0071 (1 HSPs)
scaffold0071 (51-187)||(36280-36416)
[»] chr2 (1 HSPs)
chr2 (51-169)||(24092255-24092372)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 223668 - 223446
Alignment:
Q  19 ctaccaactcatttgtaatcaaaattcgatgtagaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaa 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  223668 ctaccaactcatttgcaatcaaaattcgatgtagaatttatctaccatgaataaaagctgattg-gtttccgaaattacattacccataacacattacaa 223570  T
Q  119 tctattggcgagcacctaagaaaaaacgttatataaacttccaaccgtagacatgggtcgaaaatcatttaaacgtcggagactctcaattttaagaatt 218  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||  |||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  223569 tctattggcgagcacctaaaaaaaaatgttatataaacttccaaccgtag--atggatcggaaatcatttcaacgtcggagactctcaattttaagaatt 223472  T
Q  219 aaagctaaaagtgctattaataccta 244  Q
    ||||||||||||||||||||||||||    
T  223471 aaagctaaaagtgctattaataccta 223446  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 48638649 - 48638521
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    |||||||||||||||||||||||||||||||||||| ||| ||  |||||| | || |||||| || | ||| ||||  |||| ||| ||  ||||||||    
T  48638649 tctaccatgaataaaagctgattgagtttccgaaataacactagacataaccctttgcaatctgtttgagaggacctttgaaagaactttgcataaactt 48638550  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
    |||||| |||| || ||||||||||||||    
T  48638549 ccaaccatagagattggtcgaaaatcatt 48638521  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 9898665 - 9898708
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaat 94  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  9898665 agaatttgtctaccatgaataaaagctgattgagtttctgaaat 9898708  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 36655010 - 36655053
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaat 94  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  36655010 agaatttgtctaccatgaataaaagctgattgagtttctgaaat 36655053  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 43497239 - 43497164
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattgg 126  Q
    |||||||  ||||||||||||||||||||||||||||| ||||| ||| ||  |||||| | |  |||||||||||    
T  43497239 agaatttgcctaccatgaataaaagctgattgagtttctgaaataacactagacataacccttcgcaatctattgg 43497164  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 26371111 - 26371239
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    |||||| ||||||||||||||||| ||||||||||| ||| ||  |||||||| |  |||||| || | ||| ||||  |||| ||| || |||||||||    
T  26371111 tctaccgtgaataaaagctgattgggtttccgaaataacactagacataacacttcgcaatctgtttgagaggacctttgaaagaactttgtataaactt 26371210  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
    |||||| |||| || ||||||||||||||    
T  26371211 ccaaccatagagattggtcgaaaatcatt 26371239  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 17915280 - 17915408
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||  |||||| | |  |||||| || | ||| ||||  |||| ||| || |||||||||    
T  17915280 tctaccgtgaataaaagctgattgagtttccgaaataacactagacataacccttcgcaatctgtttgagaggacctttgaaagaactttgtataaactt 17915379  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
    |||||| |||| || ||||||||||||||    
T  17915380 ccaaccatagagattggtcgaaaatcatt 17915408  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 15028010 - 15027882
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    ||||||||| |||||||||||||||||||| ||||| ||| ||  |||||| | | |||||||||| | ||| ||||  || | ||| || |||||||||    
T  15028010 tctaccatggataaaagctgattgagtttctgaaataacactagacataacccttcacaatctatttgagaggacctttgatagaactttgtataaactt 15027911  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
    |||||| |||| || ||||| ||||||||    
T  15027910 ccaaccatagaaattggtcggaaatcatt 15027882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 15425822 - 15425958
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttat 150  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||| ||| ||  |||||| | |  ||||||||||| ||| || |  |||| ||  || |    
T  15425822 agaatttgtctaccatgaataaaagcttattgagtttctgaaataacactagacataacccttcgcaatctattggagagaactttggaaagaattttgt 15425921  T
Q  151 ataaacttccaaccgtagacatgggtcgaaaatcatt 187  Q
    | | |||||||||| |||| || |||| |||||||||    
T  15425922 aaagacttccaaccatagatattggtctaaaatcatt 15425958  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 25585968 - 25586096
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    |||||| ||||||||||||||||| ||||||||||| ||| ||  |||||||| |  |||||| || | ||| ||||  |||| ||| || |||||||||    
T  25585968 tctaccgtgaataaaagctgattgggtttccgaaataacactagacataacacttcgcaatctgtttgagaggacctttgaaagaactttgtataaactt 25586067  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
    |||||| | || || ||||||||||||||    
T  25586068 ccaaccattgagattggtcgaaaatcatt 25586096  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 13091932 - 13091990
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataac 109  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||| ||| ||| ||||||    
T  13091932 agaatttgtctaccatgaataaaagctgattgtgtttcagaaataacactacacataac 13091990  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 19322188 - 19322020
Alignment:
Q  21 accaactcatttgtaatcaaaattcgatgtagaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatc 120  Q
    ||||||||||| | ||||||||||| ||  |||||||  ||||||||||||||||||||||| |||   ||||| ||| ||  |||||| | |  |||||    
T  19322188 accaactcattagcaatcaaaattccataaagaatttgcctaccatgaataaaagctgattgtgttgatgaaataacactaggcataacccttcgcaatc 19322089  T
Q  121 tattggcgagcacctaagaaaaaacgttatataaacttccaaccgtagacatgggtcgaaaatcattta 189  Q
    |||||| ||| ||||  |  | ||| || ||||||||||||||| |||| || ||||  ||||||||||    
T  19322088 tattggtgaggacctttggtagaactttgtataaacttccaaccatagaaataggtctgaaatcattta 19322020  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18306895 - 18306958
Alignment:
Q  19 ctaccaactcatttgtaatcaaaattcgatgtagaatttatctaccatgaataaaagctgattg 82  Q
    ||||||||||||| | ||||||||||| ||  |||||||  |||||||||||||||||||||||    
T  18306895 ctaccaactcattagcaatcaaaattccatcaagaatttgcctaccatgaataaaagctgattg 18306958  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 12061325 - 12061198
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    |||||| |||||||| |||||||||||||| ||||| ||| ||  |||||| | |  |||||| || | ||| ||||  |||| ||| || |||||||||    
T  12061325 tctaccgtgaataaa-gctgattgagtttctgaaataacactagacataacccttcgcaatctgtttgagaggacctttgaaagaactttgtataaactt 12061227  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
    ||||||||||| || ||||||||||||||    
T  12061226 ccaaccgtagagattggtcgaaaatcatt 12061198  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 20617985 - 20618112
Alignment:
Q  59 tctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttatataaactt 158  Q
    |||||| |||||||| |||||||||||||| ||||| ||| ||  |||||| | |  |||||| || | ||| ||||  |||| ||| || |||||||||    
T  20617985 tctaccgtgaataaa-gctgattgagtttctgaaataacactagacataacccttcgcaatctgtttgagaggacctttgaaagaactttgtataaactt 20618083  T
Q  159 ccaaccgtagacatgggtcgaaaatcatt 187  Q
     |||||||||| || |||| |||||||||    
T  20618084 tcaaccgtagagattggtcaaaaatcatt 20618112  T

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Target: scaffold0071 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 36416 - 36280
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttat 150  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||| ||| ||  |||||| | |  ||||||||||| ||| || |  |||| ||  || |    
T  36416 agaatttgtctaccatgaataaaagcttattgagtttctgaaataacactagacataacccttcgcaatctattggagagaactttggaaagaattttgt 36317  T
Q  151 ataaacttccaaccgtagacatgggtcgaaaatcatt 187  Q
    | | |||||||||| |||| || |||| |||||||||    
T  36316 aaagacttccaaccatagatattggtctaaaatcatt 36280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 24092372 - 24092255
Alignment:
Q  51 agaatttatctaccatgaataaaagctgattgagtttccgaaattacattacccataacacattacaatctattggcgagcacctaagaaaaaacgttat 150  Q
    ||||||| ||||||||| ||||||| |||||| ||||| ||||| ||| ||   ||||| | || ||||||||||| ||| ||||  || | ||| || |    
T  24092372 agaatttgtctaccatggataaaagttgattgtgtttctgaaataacactagagataaccctttgcaatctattggtgaggacct-tgatagaactttgt 24092274  T
Q  151 ataaacttccaaccgtaga 169  Q
    |||||||||||||||||||    
T  24092273 ataaacttccaaccgtaga 24092255  T

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