View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3297_low_5 (Length: 233)
Name: NF3297_low_5
Description: NF3297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3297_low_5 |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0478 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11959 - 11742
Alignment:
| Q |
1 |
atttcaacactgtggaggatatgcgcagagtttgggcaatgggggttgtgcaattgaaccctggtctgatgcgattctatcgttggtctagtgatttttc |
100 |
Q |
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| T |
11959 |
atttcaacactgtggaggatatgcgtagagtttgggcaatgggggttgtgcaattgaaccttggtctgatgcgattctatcgttggtctagtgatttttc |
11860 |
T |
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| Q |
101 |
aatacagacacaggctcaaactcatgcccaaatatgggttcgtttcttacacttgcctcaggagtattggcgtaaccagactctattggaaatagcatcc |
200 |
Q |
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| T |
11859 |
aatatagagacaggctcaaactcatgcccaaatatgggttcgtttcttacacttgcctcagaagtattggcgtaagcagactctattggaaataacatcc |
11760 |
T |
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| Q |
201 |
ggactcggcacacctttg |
218 |
Q |
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| T |
11759 |
ggactcggcacacctttg |
11742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 26153543 - 26153760
Alignment:
| Q |
1 |
atttcaacactgtggaggatatgcgcagagtttgggcaatgggggttgtgcaattgaaccctggtctgatgcgattctatcgttggtctagtgatttttc |
100 |
Q |
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||||||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||| ||| |||||| ||||||| ||||||||||||||||||| |
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| T |
26153543 |
atttcaatactgttgaggatatgcgaagagtttgggcaatgggggttgtgaacttgaaccccggtttgatgctattctattgttggtctagtgatttttc |
26153642 |
T |
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| Q |
101 |
aatacagacacaggctcaaactcatgcccaaatatgggttcgtttcttacacttgcctcaggagtattggcgtaaccagactctattggaaatagcatcc |
200 |
Q |
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| T |
26153643 |
tacacaggcacaggctcaaacacacgcccaaatatgggtctgtttcttacacttgccccatgagtattggcgtaagcagactttattggaaatagcatcc |
26153742 |
T |
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| Q |
201 |
ggactcggcacacctttg |
218 |
Q |
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| T |
26153743 |
ggactcggcacacctttg |
26153760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 21592140 - 21592078
Alignment:
| Q |
112 |
aggctcaaactcatgcccaaatatgggttcgtttcttacacttgcctcaggagtattggcgta |
174 |
Q |
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| T |
21592140 |
aggctcaaactcacgctcagatatgggttcgattcttacacttgcctcaagagtattggcgta |
21592078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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