View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3298_low_10 (Length: 260)
Name: NF3298_low_10
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 39519622 - 39519853
Alignment:
| Q |
17 |
catttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatggggtaaaaatgttgaaaga |
116 |
Q |
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| T |
39519622 |
catttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatggggtaaaaatgttgaaaga |
39519721 |
T |
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| Q |
117 |
aattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatggttttgtagtaatcagcaa |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39519722 |
aattgaaacaataacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatggttttgtagtaatcagcaa |
39519821 |
T |
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| Q |
217 |
tgaaatcaaccatcttatgaccttgctctctc |
248 |
Q |
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|||||||||||||| |||||||||| |||||| |
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| T |
39519822 |
tgaaatcaaccatcatatgaccttgttctctc |
39519853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 39532080 - 39532311
Alignment:
| Q |
17 |
catttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatggggtaaaaatgttgaaaga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39532080 |
catttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggtagaagctttccaagataacctggctgcaatggggtaaaaatattgaaaga |
39532179 |
T |
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| Q |
117 |
aattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatggttttgtagtaatcagcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
39532180 |
aattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaacagggaaattttcaattgttttgtagtaatcagcaa |
39532279 |
T |
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| Q |
217 |
tgaaatcaaccatcttatgaccttgctctctc |
248 |
Q |
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|||||||||||||| |||||||||| |||||| |
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| T |
39532280 |
tgaaatcaaccatcatatgaccttgttctctc |
39532311 |
T |
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Back To:
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