View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3298_low_13 (Length: 249)
Name: NF3298_low_13
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45181922 - 45181700
Alignment:
| Q |
1 |
tcatgtatctatttcattttggactggctcgagcatcatttagcgacactgcatctactatatactggactgtaagtagtactctaatagtaatacacaa |
100 |
Q |
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| T |
45181922 |
tcatgtatctatttcattttggactggctcgagcatcatttagcgacactgcatctactatatactggactgtaagtagtactctaatagtaatacacaa |
45181823 |
T |
|
| Q |
101 |
ccatgttgatctgtttcattaaacaattatgttttgccttttaagattttcagatggaacctacaaattataatcagtaattacctctatcaacgtatgc |
200 |
Q |
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| T |
45181822 |
ccatgttgatctgtttcattaaacaattatgttttgccttttaagattttcagatggaacgtacaaattataatcagtaattacctctatcaacgtatgc |
45181723 |
T |
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| Q |
201 |
ttacttaatttacctacttttac |
223 |
Q |
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|||||| |||||||||||||||| |
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| T |
45181722 |
ttacttgatttacctacttttac |
45181700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 45174927 - 45174810
Alignment:
| Q |
114 |
tttcattaaacaattatgttttgcctttt-aagattttcagatggaacctacaaattataatcagtaattacctctatcaa-cgtatgcttacttaattt |
211 |
Q |
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|||||| || |||||||||||| |||||| ||||||||||| ||||||||||||||| |||| || ||||||| | || || |||| ||||||||| |
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| T |
45174927 |
tttcatcaatcaattatgtttttcctttttaagattttcagttggaacctacaaattgcaatc--tagctacctctctaaaccgcttgctgacttaattt |
45174830 |
T |
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| Q |
212 |
acctacttttacaaaggact |
231 |
Q |
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| T |
45174829 |
acctacttttaccaaggact |
45174810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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