View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3298_low_14 (Length: 249)
Name: NF3298_low_14
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 4775040 - 4775261
Alignment:
| Q |
11 |
agcataggtgtacgaaaccaacccatcaagattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagaccctcctt |
110 |
Q |
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| T |
4775040 |
agcataggtgtacgaaaccaacccatcaagattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagaccctcctt |
4775139 |
T |
|
| Q |
111 |
ttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggag |
210 |
Q |
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||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775140 |
ttaaataaattgtctctagcaggaacatgattcaaactcaaacgtaaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggag |
4775239 |
T |
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| Q |
211 |
tagagttctgaaacacctttgt |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
4775240 |
tagagttctgaaacacctttgt |
4775261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 29552984 - 29553092
Alignment:
| Q |
99 |
aagaccctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaa |
198 |
Q |
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||||||||||||||| ||||||||| | || ||||| | |||||| || |||||| ||||||||||| |||||||||||| | || | ||||||||||| |
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| T |
29552984 |
aagaccctccttttaaataaattgtttttagtaggaatacgattcagacccaatcgccaagcaaaaatagagactttgagaggaaccattttaagccaaa |
29553083 |
T |
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| Q |
199 |
gaacatgag |
207 |
Q |
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|||| |||| |
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| T |
29553084 |
gaacctgag |
29553092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 17173714 - 17173614
Alignment:
| Q |
102 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
201 |
Q |
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|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | || |||||||||||||||| |
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| T |
17173714 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcaaatattgatactttgagatgaaccactttaagccaaagaa |
17173615 |
T |
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| Q |
202 |
c |
202 |
Q |
| |
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| T |
17173614 |
c |
17173614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 38397807 - 38397707
Alignment:
| Q |
102 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
201 |
Q |
| |
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|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || ||||| |||||||| ||||||||| || |||||||||||||||| |
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| T |
38397807 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcgaaaattgatactttgagagaaaccactttaagccaaagaa |
38397708 |
T |
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| Q |
202 |
c |
202 |
Q |
| |
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| |
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|
| T |
38397707 |
c |
38397707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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