View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3298_low_16 (Length: 237)
Name: NF3298_low_16
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5534893 - 5535112
Alignment:
| Q |
1 |
caatcgacaattgcatctctgattgtgaaaatgttagggttcttctctccatcatcaaatatcaacaaatcaataatcttcaattgatagttttcaatcg |
100 |
Q |
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| T |
5534893 |
caatcgacaattgcatctctgattgtgaaaatgttagggttcttctctccatcatcaaatatcaacaaatcaataatcttcaattgatagttttcaatcg |
5534992 |
T |
|
| Q |
101 |
accttaaattgattcaagtcctcaaatctctgattgtgaaaacctcaaatcagtaatcacgattctatctcattacaacttccattttctctctctagtc |
200 |
Q |
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| T |
5534993 |
accttaaattgattcaagtcctcaaatctctgattgtgaaaacctcaaatcagtaattacgattctatctcattacaacttccgttctctctctctagtc |
5535092 |
T |
|
| Q |
201 |
tctggtgaaactgcaagctt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5535093 |
tctggtgaaactgcaagctt |
5535112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 12107937 - 12107810
Alignment:
| Q |
91 |
ttttcaatcgaccttaaattgattcaagtcctcaaatctctgattgtgaaaacctcaaatcagtaatcacgattctatctcattacaacttccattttct |
190 |
Q |
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| T |
12107937 |
ttttcaatcgatctcaaattgattcaagtcctcaaatctctgattgtgagaacctcaaattagtaatctcaattctctctcattataacttccgttt--t |
12107840 |
T |
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| Q |
191 |
ctctctagtctctggtgaaactgcaagctt |
220 |
Q |
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| T |
12107839 |
ctctatagtctccggtgaaacttcaagctt |
12107810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 1527685 - 1527744
Alignment:
| Q |
101 |
accttaaattgattcaagtcct-caaatctctgattgtgaaaacctcaaatcagtaatcac |
160 |
Q |
| |
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|||| |||||||||||||| || ||||| |||| ||||||||||||| ||||||||||||| |
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| T |
1527685 |
acctcaaattgattcaagttctacaaatttctggttgtgaaaacctc-aatcagtaatcac |
1527744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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