View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3298_low_17 (Length: 236)
Name: NF3298_low_17
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_17 |
 | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold1407 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0035 (2 HSPs) |
| | |
|
| [»] scaffold0226 (1 HSPs) |
| | |
|
| [»] scaffold0158 (2 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
|
| [»] scaffold0334 (1 HSPs) |
| | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 14224368 - 14224182
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14224368 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaagtcagaatttttagacttt-aaaaataattcctgttacaattt |
14224270 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaatta |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
14224269 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatggaaatctactcagacataattaaatta |
14224182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 14234463 - 14234277
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14234463 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaagtcagaatttttagacttt-aaaaataattcatgttacaattt |
14234365 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaatta |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
14234364 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatggaaatctactcagacataattaaatta |
14234277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 11164985 - 11164810
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
11164985 |
gatatgaaactggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt--aaaaacaattcctgttacaattt |
11164888 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||| ||||||| ||||||||| | ||| ||||||||||| ||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
11164887 |
ctaaacatacaacttaacagagtatcatcagtacgacattcgtcacattccagaccctatggaaatctactcagacat |
11164810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 16636500 - 16636330
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| |||||||| | || ||| ||| |||||||||| | |||| |||||||||| |||||||||| |
|
|
| T |
16636500 |
gatatgaaaccggtatcactttattccatctttcgttgtaaatatccatcgttaaaactcagaattttcaaactt--aaaaataattactgttacaatca |
16636403 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactca |
173 |
Q |
| |
|
||||||||||| |||||| | | |||| ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
16636402 |
gtaatcatacaacttaacatattatcattcgtacgacgttcatcacattccggactctataaaaatctactca |
16636330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 27079719 - 27079900
Alignment:
| Q |
14 |
tatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaa |
113 |
Q |
| |
|
||||||| ||||||| |||| |||||||| || |||||| |||||||||||||| |||| || ||||||||||||||| |||| ||||||||||| |
|
|
| T |
27079719 |
tatcactttatttcagctttatttgtaaatatttattgttaaaaatcagaattttcagac-ttaaaaaataattcctgt----atttttaatcatacaac |
27079813 |
T |
|
| Q |
114 |
ttaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaa-ttataatctaaatt |
199 |
Q |
| |
|
|||||| | | |||| || || || |||| |||||||| || || ||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
27079814 |
ttaacataatataattgatataacgttaatcatattccggattcgataaaaatctactcagacgtaactaaatttataatccaaatt |
27079900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 50879334 - 50879473
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||| | |||| || ||||| |||||| || || ||||| |||||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
50879334 |
gatatgaaaccggtatcgcattattccagttttcaccgtaaatattcatcgttgataatcagaattttcaagc--ttaaaaataattcccattacaatta |
50879431 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattca |
142 |
Q |
| |
|
||||||||||| |||||| |||| |||| |||||| |||| |
|
|
| T |
50879432 |
ctaatcatacagtttaacatagcatcattaatacgacgttca |
50879473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 18477105 - 18477281
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18477105 |
gatatgaaaccgatatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagacttt-aaaaataattcctgttacaattt |
18477203 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18477204 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
18477281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 18487201 - 18487377
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18487201 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagacttt-aaaaataattcctgttacaattt |
18487299 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18487300 |
ctaatcatacaaattaacagagcaccgttggtacgacattcatcacattccggactctatgaaaatctactcagacat |
18487377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 7588569 - 7588658
Alignment:
| Q |
76 |
ttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaat |
166 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| |||||| || ||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
7588569 |
ttaaaaataattctagttacaatttataatcatacaatttaaca-agtaccattggtacgaggttcatcatattccggactctataaaaat |
7588658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11176993 - 11177210
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
11176993 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt--aaaaacaattcctgttacaattt |
11177090 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaattataatctaaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177091 |
ataatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaattataatctaaattt |
11177190 |
T |
|
| Q |
201 |
aactctaatgaactcatatt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11177191 |
aactctaatgaactcatatt |
11177210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 11296311 - 11296495
Alignment:
| Q |
5 |
tgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttctaa |
104 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||| || || || ||| ||||||| |||||| |||||| ||||||||||| |||||||||| || |
|
|
| T |
11296311 |
tgaaaccggtatcgcgttatttcagttttcattgtacatattcatcgttaaaaatcaaaattttcagactt--aaaaataattcatgttacaattagcaa |
11296408 |
T |
|
| Q |
105 |
tcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaattataa |
191 |
Q |
| |
|
| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
11296409 |
tgatacaaattaacagagcatcattggtacggcattcatcatattccggactctataaaaatctactaagacataattaaattataa |
11296495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 23047438 - 23047331
Alignment:
| Q |
2 |
atatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaatttc |
101 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||| || | || |||||||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
23047438 |
atatgaaaccggtatcgcattatttcaactttcgctgtaaatatttgtatttaaaaatcagaattttcaga--tttaaaaataattccggttacaattat |
23047341 |
T |
|
| Q |
102 |
taatcataca |
111 |
Q |
| |
|
|||||||||| |
|
|
| T |
23047340 |
taatcataca |
23047331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 33086 - 32910
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33086 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaaaccagaatttttagacttt-aaaaataattcctgttacaattt |
32988 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32987 |
ctaatcatacaaattaacagagcaccattggtacaacattcatcacattccggactctataaaaatctactcagacat |
32910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 19901014 - 19901191
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19901014 |
gatatgaaaccggtatcactgtatttcaacttttattgtaaatgttaattgtttaaaatcagaatttttagacttt-aaaaataattcctgttacaattt |
19901112 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataa |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19901113 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatg-gaatctactcagacataa |
19901191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 18294310 - 18294426
Alignment:
| Q |
62 |
gaatttttagacttttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatg |
161 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
18294310 |
gaatttttagacttc--aaaataattcatgttacaatttctaatcatacaacttaacaatgtaccattggtacgacaatcatcacattccagactctata |
18294407 |
T |
|
| Q |
162 |
aaaatctactcagacataa |
180 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
18294408 |
aaaatctactcaaacataa |
18294426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 746 - 924
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
746 |
gatatgaaaccgatatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagactta-aaaaataattcctgttacaattt |
844 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataa |
180 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
845 |
ctaatcatacaaattaacagagcatcattggtacgacattcatcacgttccggactttatgaaaatctactcagacataa |
924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 187011 - 186835
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
187011 |
gatatgaaaccggtatcactttatttcaactttcattgtaaatattaattgtttaaaatcagaatttttagagttt-aaaaataattcctgttacaattt |
186913 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
186912 |
ctaatcatacaaattaacagagcaccattggtacaacattcatcacattccggactctatggaaatctactcagacat |
186835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 20933483 - 20933661
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
20933483 |
gatatgaaaccggtatcattgtatttcaactttaattgtaaatgttaattgtttaaaatcagaatttttagacttt-aaaaataattcctgttataattt |
20933581 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataa |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
20933582 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatggaaatctagtcggacataa |
20933661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 19184202 - 19184029
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||| ||||||||| |||||||||||||| |||||| ||||| |||| |||||||| ||| |
|
|
| T |
19184202 |
gatatgaaaccggtgtcactttatttcaactttcgctgtaaatattaattgttaaaaatcagaattttcagactt--aaaaacaatttctgttacagttt |
19184105 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
19184104 |
ctaatcatacaacttaacagagcaccattggtacgacattcatcacattccggactc--tggaaatctactcggacat |
19184029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34657953 - 34657778
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||| ||||| ||| |||||||||||||| | |||| ||||| |||||| ||||||||| |
|
|
| T |
34657953 |
gatatgaaatcggtatcactttatttcaactttcgctgtaaatattaatcgttaaaaatcagaattttcaaactt--aaaaacaattccaattacaattt |
34657856 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||| ||||||| ||||||||| | || |||||||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34657855 |
ctaaacatacaacttaacagagtattatcggtacgacgttcgtcacattccggactctataaaaatctactcagacat |
34657778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 20928788 - 20928759
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20928788 |
gatatgaaaccggtatcactgtatttcaac |
20928759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 87250 - 87429
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaa--ataattcctgttacaat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
87250 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaaggttaattgtttaaaatcagaatttttggactttaaaaaaaataattcctgttacaat |
87349 |
T |
|
| Q |
99 |
ttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
87350 |
ttctaattatacaaattaacagagcaccattggtacgacattcatcacatttcgaactctatgaaaatctactcagacat |
87429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 96944 - 97123
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaa--ataattcctgttacaat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
96944 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaaggttaattgtttaaaatcagaatttttggactttaaaaaaaataattcctgttacaat |
97043 |
T |
|
| Q |
99 |
ttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
97044 |
ttctaattatacaaattaacagagcaccattggtacgacattcatcacatttcgaactctatgaaaatctactcagacat |
97123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 28386923 - 28386735
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattg-ttgaaaatcagaatttttagacttttaaaaataattcctgttacaatt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28386923 |
gatatgaaaccggtatcactctatttcaactttcattgtaaatgttaattaatttaaaatcagaatttttagacttttaaaaatatttcctgttacaatt |
28386824 |
T |
|
| Q |
100 |
tctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataactaaatta |
188 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
28386823 |
tctaatcatacaaattaacagggcatcattggtgcgacattcatcatattccggactcaatggaaatctactcagacataattaaatta |
28386735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23689545 - 23689446
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||| || |||| || | || |||||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
23689545 |
gatatgaaaccggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagactt--aaaaataattcatgttacaattt |
23689448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 4456 - 4278
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4456 |
gatatgaaacctttatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagacctt-aaaaataattcctgttacaattt |
4358 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacataa |
180 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4357 |
ctagtcatacaaattaacagagcatcattggtacaacattcatcacattccggactctataaaaatctactctgacataa |
4278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 35867 - 36039
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35867 |
gatatgaaaccggtatcactttatttcaactttgattgtaaatattaattgtttaaaatcagaatttttagacttt-aaaaataattcctgttacaattt |
35965 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcag |
174 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35966 |
ctaatcatgtaaattaacagagcaccattagtacaacattcatcacattccggactctatggaaatctactcag |
36039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 28145 - 28321
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || ||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28145 |
gatatgaaaccggtatcactttatttcaactttcattgttaacattatttgtttaaaatttgaatttttagacttt-aaaaataattcctgttacaattt |
28243 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28244 |
ctaatcatacaaattaatagagcaccattggtacaacagtcatcacattccagactctatgaaaatctactcagacat |
28321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 38392 - 38567
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
38392 |
gatatgaaaccggtatcactttatttcaactttcaccgtaaatattaatcgttaaaaatcagaattttcagactt--aaaaacaattcctgttacaattt |
38489 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||| ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38490 |
ctaaacatacaacttaacagagtatcattggtacgacgttcatcatattccggactctatagaaatctactcagacat |
38567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 12426 - 12251
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || |||||| |||||||||||||| |||||| ||| | ||||||||||||||||| |
|
|
| T |
12426 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcattgttaaaaatcagaattttcagactt--aaatacaattcctgttacaattt |
12329 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
12328 |
ataatcatacaatttaacagagtactattggtacgacattcatcacattccggaccctatggaaatctactcagacat |
12251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 17068 - 16850
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||| || ||||||| |||| || ||||| |||||| || || || |||||||||||||| | |||| |||| ||||||||||||||||| |
|
|
| T |
17068 |
gatatgaaatcgatatcactttattccagctttcgccgtaaatattcatcttttaaaatcagaattttcaaactt--aaaaccaattcctgttacaattt |
16971 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctat-gaaaatctactcagacataactaaattataatctaaatt |
199 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
16970 |
aaaatcatacaatttaacagagtaccattggtacgacgttcatcacattccggactctataaaaaaactactcaaacatagctaaattataatctaaatt |
16871 |
T |
|
| Q |
200 |
taactctaatgaactcatatt |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
16870 |
taactctaatgaactcatatt |
16850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 76247 - 76422
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| |||||||||| |||||| |
|
|
| T |
76247 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt--aaaaacaattcctgttgcaattt |
76344 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||| |
|
|
| T |
76345 |
ataatcatacaatttaacagagtaccattggtacgacattcatcatattccagaccctatggaaatctactcagacat |
76422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 87972 - 88147
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || || ||| |||| ||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
87972 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaaccagaattttcagactt--aaaaacaattcctgttacaattt |
88069 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
88070 |
ataatcatacaatttaacagagtaccattggtacgacattcatcacattccagaccctatggaaatctactcacacat |
88147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 7159590 - 7159415
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||| ||||||||||| |
|
|
| T |
7159590 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt--aaaaacaattcttgttacaattt |
7159493 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| |
|
|
| T |
7159492 |
ataatcatacaatttaacagagtaccattggtacgacattcatcacattccgaactatatggaaatctactcaaacat |
7159415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 15933546 - 15933371
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
15933546 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt--aaaaacaattcctgttacaattt |
15933449 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||| ||||||| ||||||||| | ||| |||||||| ||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
15933448 |
ctaaacatacaacttaacagagtatcatcggtacgacgttcgtcacattccggactctataaaaatctacgcagacat |
15933371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 15941889 - 15941714
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||| || || ||| |||||||||||||| |||||| ||||| ||||| ||||||||||| |
|
|
| T |
15941889 |
gatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagactt--aaaaacaattcatgttacaattt |
15941792 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||| ||||||| ||||||||| | ||| |||||||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15941791 |
ctaaacatacaacttaacagagtatcatcggtacgacgttcgtcacattccggactctataaaaatctactcagacat |
15941714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 22074565 - 22074494
Alignment:
| Q |
106 |
catacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||||| ||||| |||||| | |||||||||| |||||| |
|
|
| T |
22074565 |
catacaaattaaaagagtaccattggtacgacaatcatcatattcccgactctgt-aaaatctacttagacat |
22074494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 7960394 - 7960219
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgttgaaaatcagaatttttagacttttaaaaataattcctgttacaattt |
100 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| ||||||| ||||| ||| |||||||||||||| |||||| ||||| |||| |||||| ||||| |
|
|
| T |
7960394 |
gatatgaaaccggtatcgctttatttcaactttcgctgtaaatattaatcgttaaaaatcagaattttcagactt--aaaaacaatttctgttaaaattt |
7960297 |
T |
|
| Q |
101 |
ctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcagacat |
178 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||| ||||||| |||||||||||||| | || ||||||||||| |
|
|
| T |
7960296 |
ctaaacatacaacttaacagagtatcattggtacgacgttcatcatattccggactctatagagatatactcagacat |
7960219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 5227 - 5329
Alignment:
| Q |
76 |
ttaaaaataattcctgttacaatttctaatcatacaaattaacagagcaccattggtacgacattcatcacattccggactctatgaaaatctactcaga |
175 |
Q |
| |
|
||||| ||||||| | ||||| ||||||||||||||| |||||||| | ||||| || || ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
5227 |
ttaaatataattcattttacagtttctaatcatacaacttaacagaatatcattgatagaacgttcatcatattccaaactctataaaaatctactcaga |
5326 |
T |
|
| Q |
176 |
cat |
178 |
Q |
| |
|
||| |
|
|
| T |
5327 |
cat |
5329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 116908 - 116879
Alignment:
| Q |
1 |
gatatgaaaccggtatcactgtatttcaac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
116908 |
gatatgaaaccggtatcactgtatttcaac |
116879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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