View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3298_low_18 (Length: 236)
Name: NF3298_low_18
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 24225059 - 24224841
Alignment:
| Q |
18 |
gatacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctcttaacctccacaccctccgtcgtcgacacctggctcctcgaaa |
117 |
Q |
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| T |
24225059 |
gatacccacgacacctactccatcaccttcgactccaccttcacaatccaatccctcttaacctccacaccctccgtcgtcgacacctggctcctcgaaa |
24224960 |
T |
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| Q |
118 |
ccctccacctccaccccccattccccgtcctcgtcggcctcgacgtcgaatggcgccccaatttcaaacgcggccaatccaacccaaccgccgtcctcca |
217 |
Q |
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| T |
24224959 |
ccctccgcctccaccccccattccccgtcctcgtcggcctcgacgtcgaatggcgccccaatttcaaacgcggccaatccaacccaaccgccgtcctcca |
24224860 |
T |
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| Q |
218 |
gctctgtatcaacaaccgc |
236 |
Q |
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| T |
24224859 |
gctctgtatcaacaaccgc |
24224841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 24229071 - 24229124
Alignment:
| Q |
21 |
acccacgacacctactccatcaccttcgactccaccttcacaatccaatccctc |
74 |
Q |
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| T |
24229071 |
acccacaacacctactccatcaccatcgacaccaccctcacaatccaaaccctc |
24229124 |
T |
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