View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3298_low_2 (Length: 448)
Name: NF3298_low_2
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Complemental strand, 29858381 - 29857978
Alignment:
| Q |
11 |
caaaggaaaaagcacattaactctccccttcatcatacacctaaatcctctatttaagtccctctaccccccttccctctccattcattccaaactcaca |
110 |
Q |
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| T |
29858381 |
caaaggaaaaagcacattaactctccccttcatcatacacctaaatcctctatttaagtccctctaccccccttccctctccattcattccaaactcaca |
29858282 |
T |
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| Q |
111 |
tgctcaattctcaaccttagttcctctctctctttctcaacctccaaaccttcttcattcaaattaaacatcttccaactttaacaaacaaattattttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| |
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| T |
29858281 |
tgctcaattctcaaccttagttcctctctctctttctcaacctccaaaccttcttcattcaaatcaaacctcttccaactttaacaaacaaaatattttc |
29858182 |
T |
|
| Q |
211 |
aaacatcttaaacatactcaacactctcgccagtaccttctggtcgaactcaggattatcaaacattttcttctgaaaacccgagagttaaaacaaaatg |
310 |
Q |
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| T |
29858181 |
aa-------------------cactctcgccagtaccttctggtcgaactcaggattatcaaacattttcttctgaaaacccgagagttaaaacaaaatg |
29858101 |
T |
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| Q |
311 |
gagaacttgattcgcctagtcgataatgaagaagacgcagtctcacatcgttgcatttgggtaaatggtcctataatagtaggagcaggaccatcaggtc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29858100 |
gagaacttgattcgcctagtcgataatgaagaagacgcagtctcacatcgttgcatttgggtaaatggtcctataatagtaggagcaggaccatcaggtc |
29858001 |
T |
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| Q |
411 |
tagcaacagcagcatgtcttaag |
433 |
Q |
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| T |
29858000 |
tagcaacagcagcatgtcttaag |
29857978 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 39838978 - 39839050
Alignment:
| Q |
359 |
cgttgcatttgggtaaatggtcctataatagtaggagcaggaccatcaggtctagcaacagcagcatgtctta |
431 |
Q |
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|||||||||||||| ||||| ||| | || |||| ||||| ||||| ||||| ||||| ||||||||||||| |
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| T |
39838978 |
cgttgcatttgggtcaatggacctgtgatcataggtgcaggtccatctggtcttgcaacggcagcatgtctta |
39839050 |
T |
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