View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3298_low_3 (Length: 444)
Name: NF3298_low_3
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3298_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 427
Target Start/End: Complemental strand, 5214178 - 5213756
Alignment:
| Q |
5 |
tgtcgaagaatatgaggtcccaataaaaaaagctctaaatacgaaacaattatnnnnnnnnttgttctttctaaaaatttgagtttcgccactatgatta |
104 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5214178 |
tgtcgaacaagatgaggtcccaataaaaaaagctctaaatacggaacaattataaaaaaaattgttctttctaaaaatttgagtttcgccactatgatta |
5214079 |
T |
|
| Q |
105 |
gttatttgtatccatggtgtttgatggaaagccccaaagatgttgggttgcagggaatattgtttcgaatgagaaactaacagtgtctgcttcaaacggg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
5214078 |
gttatttgtatccatggtgtttgatggaaagccccaaagatgttgggttgcagggaatattgtttcgaatgagaaactaatagtgtctgcttcaaacagg |
5213979 |
T |
|
| Q |
205 |
attgggttttcttaaatattattgttgggtctaacacaacctcattacatcgatttgtgaagtgataattgttcccatttataaacatatgtttcaagtt |
304 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
5213978 |
attgggttttgttaaaaattattgttgggtctaacacaatctcataacattgatttgtgaagtgataattgttctcatttataaacatatgttctaagtt |
5213879 |
T |
|
| Q |
305 |
atcactggtcatcgtctgactcttaacgcaccctcttacgtccaacattattgtacttgatatgtagatataaatgatgggtgacctgataacaaaaatc |
404 |
Q |
| |
|
||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5213878 |
atcgttgatcatcgtctgtctcttaacgcaccctcttacgtccaacattattgtacttgatacgtagatataaatgatgggtgacctgataacaaaaatc |
5213779 |
T |
|
| Q |
405 |
tgatatgaggtggttcaagggat |
427 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5213778 |
tgatatgaggtggttcaagggat |
5213756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 29005935 - 29005869
Alignment:
| Q |
228 |
gttgggtctaacacaacctcattacatcgatttgtgaagtgataattgttcccatttataaacatat |
294 |
Q |
| |
|
|||||||||||||||||||||| | ||| || |||||||| |||||||||| |||||||||||| |
|
|
| T |
29005935 |
gttgggtctaacacaacctcataaattcggcttatgaagtgaggattgttcccacttataaacatat |
29005869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 16962289 - 16962329
Alignment:
| Q |
258 |
tttgtgaagtgataattgttcccatttataaacatatgttt |
298 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
16962289 |
tttgtgaggtgagaattgttcccacttataaacatatgttt |
16962329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University