View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3298_low_7 (Length: 309)

Name: NF3298_low_7
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3298_low_7
NF3298_low_7
[»] chr8 (1 HSPs)
chr8 (2-294)||(28594505-28594797)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 28594505 - 28594797
Alignment:
Q  2 gagagaaagaggtgtacgtgttgtgtgtataagtgtatagcttagggacaaagtacttatcattgttaagaaggaaaagagaagaaatctagttggcagt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28594505 gagagaaagaggtgtacgtgttgtgtgtataaatgtatagcttagggacaaagtacttattattgttaagaaggaaaagagaagaaatctagttggcagt 28594604  T
Q  102 tagtattaccacaaataggtaatgcaatagctttgggctcacgttagtgtacctgacacgttgtgttcacccacgtagacattaggctcagcatatccat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28594605 tagtattaccacaaataggtaatgcaatagctttgggctcacgttagtgtacctgacacgttgtgttcacccacgtagacattaggctcagcatatccat 28594704  T
Q  202 ccattcattcccaatcaattagtattaactattaactagataaattaacacttgtttggtataacaaattagttgattaattagcttcttatt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28594705 ccattcattcccaatcaattagtattaactattaactagataaattaacacttgtttggtataacaaattagttgattaattagcttcttatt 28594797  T

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