View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3298_low_9 (Length: 262)

Name: NF3298_low_9
Description: NF3298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3298_low_9
NF3298_low_9
[»] chr6 (12 HSPs)
chr6 (3-262)||(2601976-2602235)
chr6 (3-258)||(33234876-33235127)
chr6 (58-250)||(6820967-6821159)
chr6 (11-216)||(19294279-19294482)
chr6 (20-258)||(14494459-14494698)
chr6 (3-258)||(1255682-1255941)
chr6 (3-91)||(56894-56982)
chr6 (3-258)||(12843789-12844045)
chr6 (3-94)||(34011336-34011427)
chr6 (19-94)||(34013439-34013514)
chr6 (19-94)||(17539919-17539994)
chr6 (44-109)||(6812415-6812480)
[»] chr1 (9 HSPs)
chr1 (7-258)||(16426322-16426574)
chr1 (72-258)||(3387610-3387797)
chr1 (96-258)||(50127181-50127343)
chr1 (89-250)||(3954922-3955084)
chr1 (7-91)||(32740740-32740824)
chr1 (115-250)||(48632611-48632747)
chr1 (3-99)||(50127494-50127590)
chr1 (3-229)||(23431752-23431980)
chr1 (153-258)||(9149018-9149123)
[»] chr2 (13 HSPs)
chr2 (19-258)||(17651161-17651401)
chr2 (20-177)||(41848922-41849080)
chr2 (3-215)||(38783673-38783886)
chr2 (3-223)||(32200878-32201099)
chr2 (3-222)||(9929517-9929737)
chr2 (42-202)||(16661253-16661414)
chr2 (168-250)||(44649995-44650077)
chr2 (32-94)||(18724896-18724959)
chr2 (34-214)||(27003952-27004133)
chr2 (19-205)||(34409655-34409843)
chr2 (77-217)||(26576021-26576162)
chr2 (153-252)||(4748106-4748205)
chr2 (20-69)||(4748269-4748318)
[»] scaffold1723 (1 HSPs)
scaffold1723 (58-252)||(364-557)
[»] chr8 (14 HSPs)
chr8 (3-258)||(27401709-27401965)
chr8 (72-258)||(18393571-18393758)
chr8 (13-248)||(3159736-3159963)
chr8 (126-248)||(2875409-2875532)
chr8 (126-248)||(2796200-2796326)
chr8 (153-248)||(2889764-2889859)
chr8 (153-248)||(3145276-3145371)
chr8 (3-223)||(15850511-15850732)
chr8 (23-192)||(28867194-28867364)
chr8 (3-261)||(1225942-1226200)
chr8 (23-192)||(28869758-28869927)
chr8 (78-141)||(13097405-13097468)
chr8 (42-222)||(37855085-37855266)
chr8 (19-94)||(18603242-18603317)
[»] scaffold0012 (1 HSPs)
scaffold0012 (77-252)||(209151-209325)
[»] chr7 (19 HSPs)
chr7 (81-262)||(27993866-27994051)
chr7 (58-255)||(37338786-37338984)
chr7 (42-252)||(11809304-11809507)
chr7 (2-258)||(27616210-27616467)
chr7 (48-258)||(11820549-11820752)
chr7 (185-252)||(9729902-9729969)
chr7 (42-124)||(9730062-9730144)
chr7 (58-203)||(11816926-11817064)
chr7 (3-94)||(43837406-43837497)
chr7 (20-94)||(5741583-5741657)
chr7 (156-258)||(32716533-32716635)
chr7 (21-94)||(11812686-11812759)
chr7 (3-53)||(45216141-45216191)
chr7 (161-250)||(6439784-6439873)
chr7 (168-208)||(48598361-48598401)
chr7 (116-202)||(11810991-11811077)
chr7 (34-86)||(11814584-11814636)
chr7 (180-223)||(25445505-25445549)
chr7 (65-105)||(48598252-48598292)
[»] chr5 (5 HSPs)
chr5 (20-257)||(32676657-32676893)
chr5 (66-140)||(4111966-4112040)
chr5 (3-199)||(40837692-40837889)
chr5 (19-109)||(41815782-41815871)
chr5 (154-229)||(38989299-38989374)
[»] chr4 (6 HSPs)
chr4 (42-143)||(32593718-32593819)
chr4 (186-255)||(32593896-32593964)
chr4 (3-94)||(54305542-54305633)
chr4 (7-94)||(55680627-55680714)
chr4 (153-223)||(40289207-40289277)
chr4 (3-68)||(658632-658697)
[»] chr3 (5 HSPs)
chr3 (5-94)||(43922128-43922217)
chr3 (21-254)||(21408884-21409118)
chr3 (3-94)||(26565197-26565288)
chr3 (58-222)||(11410624-11410789)
chr3 (211-258)||(42718618-42718665)
[»] scaffold0325 (1 HSPs)
scaffold0325 (27-250)||(12788-13012)
[»] scaffold0891 (1 HSPs)
scaffold0891 (3-206)||(2358-2560)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 262
Target Start/End: Original strand, 2601976 - 2602235
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2601976 acacctgacacgacagttacacggacacgtcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttataaaagat 2602075  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaacttagcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatt 202  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2602076 ctaaattaagaatcaaaatacaaacatatgcatctaacttagcagattacttcattagaaaaaggtatataacaagatacaatagtatttaccctttatt 2602175  T
Q  203 tatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602176 tatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccc 2602235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 33235127 - 33234876
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    |||||||| |||||| ||| |  ||||| ||||||  ||||||||||||| ||| |||||||||||    ||||||| |||||||||||||| |||| ||    
T  33235127 acacctgatacgacattgatagagacacgtcgacatcgttaatgtaaaaagcctaggacaccgacattgttacctatgtattaatttatttataaaatat 33235028  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||||| |   |||||||||| ||||  ||||||||||| ||||  ||| ||||||| |||||| | |||||||||||||||||||||||| || ||||    
T  33235027 ctaaatttatcatcaaaatacatacat--gcatctaacttgagcaatttatttcatta-aaaaagttttataacaagatacaatagtatttgacc-ttat 33234932  T
Q  202 ttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    |||||||| |||||||| ||||||| ||  ||||||||||||||||||||| |||||    
T  33234931 ttatccatctactatcg-aaaatttcaaaatgttgtaatcaactttaatgtctataa 33234876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 6820967 - 6821159
Alignment:
Q  58 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttca 156  Q
    ||||||||||| | |||| |||||||||||||| ||| |||| ||||||||| ||| |||||||| | ||||||||||||| ||| ||||  ||| ||||    
T  6820967 ggacaccgacatcgctacttatatattaatttacttataaaaaatctaaatttagaatcaaaatatatacatatgcatctatcttgagcaatttatttca 6821066  T
Q  157 ttagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaat 250  Q
    ||| ||| || | ||||||||  | ||||||||||||   ||||||||||||| |||| |  |||| |||||| |||||||||| || ||||||    
T  6821067 ttaaaaatagttgtataacaatgtgcaatagtatttggaatttatttatccatctactgt-aaaaattttaaaagtgttgtaattaaatttaat 6821159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 19294279 - 19294482
Alignment:
Q  11 cacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaatta 110  Q
    ||||||| ||||||| |||||||||||| | ||||||||||||  | ||||||||| ||| |||| ||||| |||||||||||| | | | |||||| |     
T  19294279 cacgacactgacacgaacacatcgacaccgctaatgtaaaaaatataggacaccgataccgctacatatatgttaatttatttaaagacggtctaaaatg 19294378  T
Q  111 agagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccat 209  Q
      | | |||||||| | |||  |||||||||| ||||  ||| ||||||||||||||   |  |||||||||  |||||||||| ||||||||||| |||    
T  19294379 gaaattaaaatacatatataaacatctaacttaagcaatttatttcattagaaaaag---ttcaacaagatatcatagtatttgacctttatttattcat 19294475  T
Q  210 gtactat 216  Q
     ||||||    
T  19294476 ctactat 19294482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 14494698 - 14494459
Alignment:
Q  20 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaa 119  Q
    ||||||||||| ||||||| | |||||||||| |    ||||||||||||| |||| ||||| |||||||||||| | | | |||||| | | | | |||    
T  14494698 gacacggacacgtcgacaccgctaatgtaaaatatacaggacaccgacaccgctacatatatgttaatttatttaaagacggtctaaaatgaaaattaaa 14494599  T
Q  120 atacaaacatatgcatctaac-ttagcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcg 218  Q
    ||||| | |||  |||||| | ||||||  ||| |||||||||||||| | || ||||| |||  |||||||||| ||||||||||| | | || ||||     
T  14494598 atacatatataaacatctatctttagcaatttatttcattagaaaaagttctacaacaaaatatcatagtatttgacctttatttattcgtctattatca 14494499  T
Q  219 aaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    ||||| |||||  || | ||||||||| | |||| |||||    
T  14494498 aaaaagttaaaaatgatataatcaactatgatgtctataa 14494459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 1255941 - 1255682
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacc---tatatattaatttatttacaaaa 99  Q
    |||||||| |||| | |||||| || || |||||||||||| |||||||||  | ||||||||||||| ||||    ||||| |||||||||||  | |     
T  1255941 acacctgatacgatactgacacagatacttcgacactgttagtgtaaaaaatatgggacaccgacaccgctactacatatatgttaatttatttgtagac 1255842  T
Q  100 gatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctt 198  Q
    | |||||| | | | |||||||||| | ||| |||| |||||| ||||  ||| || ||||||||||| | || |||||||||   ||||||||| | ||    
T  1255841 ggtctaaaatgaaaatcaaaatacatatataagcatttaacttgagcaagttattttattagaaaaagttctaaaacaagatatcgtagtatttgacatt 1255742  T
Q  199 tatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    |||||||  || | ||||| |||||  ||||  |||| ||||||||| |||||| |||||    
T  1255741 tatttatgtatctgctatcaaaaaagctaaaaatgttataatcaactgtaatgtctataa 1255682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 56894 - 56982
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttat 91  Q
    ||||||||||||||| ||| |||||||||||||||| | |||| |||||||  | ||||||  ||||| |||| ||||| |||||||||    
T  56894 acacctgacacgacattgatacggacacatcgacaccgctaatataaaaaatataggacacgaacaccgctacatatatgttaatttat 56982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 12843789 - 12844045
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    |||| |||||||||| ||||||  |||| ||||||||| |||| ||| |||  | ||||||  ||||  |||| ||||| |||||||||||| | | | |    
T  12843789 acacttgacacgacactgacacaaacacgtcgacactgctaatataacaaatataggacactaacactgctacatatatgttaatttatttaaagacggt 12843888  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||| | | | | |||||||| | |||  |||||||||| ||||   || |||||||||| ||| | || || ||||||  |||||||||| |||||||    
T  12843889 ctaaaatgaaaatgaaaatacatatataaacatctaacttgagcaatatatttcattagaacaagttctacaataagatatcatagtatttgacctttat 12843988  T
Q  202 ttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    |||| ||| ||||||| |||||  ||||  || | ||||||||| |||||| |||||    
T  12843989 ttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtgtataa 12844045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 34011427 - 34011336
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    |||| |||||| ||| |||||||||||| ||||| | | ||||||||||||  | |||||||||||||  ||| ||||| ||||||||||||    
T  34011427 acacgtgacacaacactgacacggacacgtcgacgccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 34011336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 34013439 - 34013514
Alignment:
Q  19 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    |||||||||||| ||||||| | ||||||||||||  | |||||||||||||  ||| ||||| ||||||||||||    
T  34013439 tgacacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 34013514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 17539919 - 17539994
Alignment:
Q  19 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    |||||||||||  ||||||| ||||||||||||||  |  ||||||||||||  ||| ||||| ||||||||||||    
T  17539919 tgacacggacatgtcgacaccgttaatgtaaaaaatataagacaccgacaccattacatatatgttaatttattta 17539994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 6812415 - 6812480
Alignment:
Q  44 atgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaatt 109  Q
    ||||||||||  | ||||||| ||| | ||||||||||||||||||| ||| |||| |||||||||    
T  6812415 atgtaaaaaaaatgggacaccaacatcgctacctatatattaatttacttataaaaaatctaaatt 6812480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 16426322 - 16426574
Alignment:
Q  7 ctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaa 106  Q
    ||||||| ||| |||||||||||| || |||| ||||||||||||| | | |||||| |||||| ||||||||||||||||||||||| ||||||| |||    
T  16426322 ctgacacaacactgacacggacacgtcaacaccgttaatgtaaaaagcataggacactgacaccgctacctatatattaatttatttataaaagatataa 16426421  T
Q  107 attaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttat 205  Q
    ||||||| |||||||||| ||||||||||||||||| ||||  ||||||||||| || ||| | ||||||||  |||||||||||||| |||||||||||    
T  16426422 attaagaatcaaaatacatacatatgcatctaacttgagcaatttacttcattaaaacaagttctataacaaattacaatagtatttggcctttatttat 16426521  T
Q  206 ccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    | || || ||| ||||||||||||||   |||||||||||||||||| |||||    
T  16426522 ctatctattattgaaaaatttaaatgcactgtaatcaactttaatgtctataa 16426574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 3387610 - 3387797
Alignment:
Q  72 ctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtat 170  Q
    |||| |||||||||||||||||| |||| ||||||||| ||| |||||||||| |||||||||| |||||| | ||  ||| || |||| |||||| | |    
T  3387610 ctacttatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcatttaacttgaacaatttattttattaaaaaaagttct 3387709  T
Q  171 ataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    ||||||||||| ||||||||||| ||||||||||| ||| ||| |||||||||||||||   |||||||||||||||||||| |||||    
T  3387710 ataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctataa 3387797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 50127343 - 50127181
Alignment:
Q  96 aaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgc 194  Q
    |||| ||||||| ||| | |||||||||| ||||||||||||||||| | ||  ||| ||||||| | |||| | ||||||||||||||||||||||||     
T  50127343 aaaatatctaaactaataatcaaaatacatacatatgcatctaacttgaacaatttatttcattaaataaagttctataacaagatacaatagtatttgg 50127244  T
Q  195 cctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    ||||||||| | ||| ||||||||||||||||||||| | || | ||||||||||||| |||||    
T  50127243 cctttattt-ttcatctactatcgaaaaatttaaatgcgctgcattcaactttaatgtctataa 50127181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 3954922 - 3955084
Alignment:
Q  89 tatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatag 187  Q
    |||||| |||||||| ||||| ||| ||| |||||| |||| |||||||||||| ||||  ||| ||||||| |||||| | || || ||||||| || |    
T  3954922 tatttataaaagatcaaaattgagaatcagaatacatacatgtgcatctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcg 3955021  T
Q  188 tatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaat 250  Q
    |||||| ||||||||||||||| |||||||||||||  ||||   ||||||||||||||||||    
T  3955022 tatttgacctttatttatccatctactatcgaaaaagctaaaaacgttgtaatcaactttaat 3955084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 32740740 - 32740824
Alignment:
Q  7 ctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttat 91  Q
    ||||||||||| |||||||| || ||||||||| |||||||||||||  | |||||| |||||| |||| ||||| |||||||||    
T  32740740 ctgacacgacactgacacggtcatatcgacactattaatgtaaaaaatataggacactgacaccactacatatatgttaatttat 32740824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 48632747 - 48632611
Alignment:
Q  115 tcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtac 213  Q
    ||||||| || ||||| | || |||||| ||||| ||| ||||||  |||||| | || |||||||||| |||||||||| ||||||||||| | | |||    
T  48632747 tcaaaattcatacataagaatttaacttgagcagtttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctac 48632648  T
Q  214 tatcgaaaaatttaaatgtgttgtaatcaactttaat 250  Q
    |||| |||||  ||||   ||||||||||||||||||    
T  48632647 tatcaaaaaagctaaaaacgttgtaatcaactttaat 48632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 50127590 - 50127494
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaa 99  Q
    ||||||||||||| | | |  ||||||| |||| |||| ||||||||||||| | ||||| || |||| ||| ||||||||||||||||||| ||||    
T  50127590 acacctgacacgatactaatccggacacgtcgatactgctaatgtaaaaaacataggacatcgccaccgctatctatatattaatttatttataaaa 50127494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 23431752 - 23431980
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacc-tcggacaccgacacctctacctatatattaatttatttacaaaaga 101  Q
    |||||||| |||||| ||||||  |||| || |||||| || |||||||||   | ||| |||||||   |||| ||||| |||||||||||| | | |     
T  23431752 acacctgatacgacactgacacaaacacttcaacactggtagtgtaaaaaaatataggataccgacagtgctacatatatgttaatttatttatatacgg 23431851  T
Q  102 tctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgcccttta 200  Q
    |||||| | | | |||||||||| | ||| ||||||||||| ||||  ||| |||||||||||||| | || ||||| |||   ||||||||| | || |    
T  23431852 tctaaaatgaaaatcaaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttctaaaacaaaatatcgtagtatttgacattca 23431951  T
Q  201 tttatccatgtactatcgaaaaatttaaa 229  Q
    ||||| ||| ||||||| ||||| |||||    
T  23431952 tttattcatctactatcaaaaaagttaaa 23431980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 9149123 - 9149018
Alignment:
Q  153 ttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgt 252  Q
    ||||||||||||| || || |||||||||  |||||||||  |||||||||||  || ||||||| |||||  ||||  |||| ||  ||||||||||||    
T  9149123 ttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatctactatcaaaaaagctaaaaatgttatagccaactttaatgt 9149024  T
Q  253 ttataa 258  Q
     |||||    
T  9149023 ctataa 9149018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 17651161 - 17651401
Alignment:
Q  19 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaa 118  Q
    ||||||| |||| ||||||  | |||| |||||||| | ||| || |||||| ||  ||||||||||||||||||| | |||||||||||||| |  |||    
T  17651161 tgacacgaacacgtcgacatcgctaatataaaaaacataggatactgacaccgctggctatatattaatttatttatataagatctaaattaaaaaccaa 17651260  T
Q  119 aatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatc 217  Q
    |||||| ||||||||||||||||| ||||  ||| ||||||| || ||| | ||||||||| ||||||| |||||| ||||||||||||||| ||||||     
T  17651261 aatacatacatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctactatt 17651360  T
Q  218 gaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    |||||| ||||||  |||||||||||||||||||| |||||    
T  17651361 gaaaaacttaaatacgttgtaatcaactttaatgtctataa 17651401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 41848922 - 41849080
Alignment:
Q  20 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaa 119  Q
    ||||| ||||||||||||| | ||||||||||||  | ||||||||||||| ||| ||||||||||||||||||| |||| ||||||||| ||| |||||    
T  41848922 gacactgacacatcgacaccgctaatgtaaaaaatataggacaccgacaccgctatctatatattaatttatttataaaatatctaaattgagaatcaaa 41849021  T
Q  120 atacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaa 177  Q
    ||||| ||||||| ||||||||| ||||  ||| ||||||| |||||||| ||||||||    
T  41849022 atacatacatatgaatctaacttgagcactttatttcattaaaaaaaggtctataacaa 41849080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 38783886 - 38783673
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||| | ||||||||||||||||||| || ||||||||||  |   |||||||||| |  ||| ||||||||||||||||||| |||| ||    
T  38783886 acacctgacacgatactgacacggacacatcgacattgctaatgtaaaagtcagaggacaccgacgctgctatctatatattaatttatttataaaatat 38783787  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaact-tagcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    || |||| ||| |||||||||| |||||| |||||| ||   |||  ||| ||||||| |||||| | ||||||||||||||| | |||||| | |||||    
T  38783786 ctgaattgagaatcaaaatacatacatatacatctatctagggcaatttatttcattaaaaaaagttttataacaagatacaacaatatttgacatttat 38783687  T
Q  202 ttatccatgtacta 215  Q
    |||||||| |||||    
T  38783686 ttatccatctacta 38783673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 32201099 - 32200878
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||  | |||||||||||||  ||  ||||| |||||||||||| | | | |    
T  32201099 acacctgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccattaaatatatgttaatttatttaaagacggt 32201000  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||| | | | | |||||||| | |||  |||||||||| ||||  |||  ||||||||||||| | || |||||||||  |||||||||| |||||||    
T  32200999 ctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacctttat 32200900  T
Q  202 ttatccatgtactatcgaaaaa 223  Q
    |||| ||| ||||||| |||||    
T  32200899 ttattcatctactatcaaaaaa 32200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 9929517 - 9929737
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    |||| |||||||||| |||||||||||| ||||||| | ||||||||||||  | ||||||| ||||  |||| ||||| |||||||||||| | | | |    
T  9929517 acacttgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaatataggacaccaacactgctacatatatgttaatttatttaaagacggt 9929616  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||| | | | | |||||||| | |||  ||||||| || ||||  ||| |||||||||||||| | || |||||||||  |||||||||| |||||||    
T  9929617 ctaaaatgaaaattaaaatacatatataaacatctaatttgagcaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttat 9929716  T
Q  202 ttatccatgtactatcgaaaa 222  Q
    |||| ||| ||||||| ||||    
T  9929717 ttattcatctactatcaaaaa 9929737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 16661414 - 16661253
Alignment:
Q  42 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaact 141  Q
    |||||||| |||| | ||||||||| ||| |||| |||||||||||| || || |||||||||||||| ||| ||| |||||| |||| || ||||||||    
T  16661414 taatgtaataaacattggacaccgataccgctacatatatattaattcatgtataaaagatctaaattgagaatcagaatacatacatgtgtatctaact 16661315  T
Q  142 t-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatt 202  Q
    | ||||  ||| || |||| |||||| | || |||||||||  |||||||||  ||||||||    
T  16661314 tgagcaatttattttattaaaaaaagttctaaaacaagataggatagtatttaacctttatt 16661253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 44650077 - 44649995
Alignment:
Q  168 tatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaat 250  Q
    |||| |||||||||| |||| ||||| ||||||||||| ||| ||||||| ||||| |||||  |||||||||||||||||||    
T  44650077 tataaaacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaactttaat 44649995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 18724959 - 18724896
Alignment:
Q  32 tcgacactgttaatgtaaaaaacc-tcggacaccgacacctctacctatatattaatttattta 94  Q
    ||||||| | |||||||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  18724959 tcgacaccgataatgtaaaaaaccataggacaccgacaccgctacctatatattaatttattta 18724896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 27003952 - 27004133
Alignment:
Q  34 gacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgc 133  Q
    ||||||||||||||||||||  | ||||||||||||| |||| ||||| |||||||||||| | | | |||||| | | |   |||||||| | |||  |    
T  27003952 gacactgttaatgtaaaaaatataggacaccgacaccgctacgtatatgttaatttatttaaagacggtctaaaatgaaaactaaaatacatatataaac 27004051  T
Q  134 atctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtact 214  Q
    ||||||||| || |  ||| ||||||| |||||| | |  |||||||||  |||||||||| ||||||||||| ||| ||||    
T  27004052 atctaacttgagaaatttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctact 27004133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 34409843 - 34409655
Alignment:
Q  19 tgacacggacacatcgacactgttaatgtaa-aaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat-ctaaattaagagtc 116  Q
    |||||||||||||||||||| | |||||||| |||| || |||||||||||||  ||  |||||||||||||||||| | | | | | |||| || | |     
T  34409843 tgacacggacacatcgacaccgctaatgtaaaaaaatctaggacaccgacaccattagatatatattaatttatttatagacggtccaaaataaaaaatt 34409744  T
Q  117 aaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttat 205  Q
    |||||||| | |||  |||||||||| |||| |||   ||||||||||||| | || |||||||||  |||||||||| |||||||||||    
T  34409743 aaaatacatatataaacatctaacttgagca-atttagtcattagaaaaagttctacaacaagatattatagtatttgacctttatttat 34409655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 26576021 - 26576162
Alignment:
Q  77 tatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataac 175  Q
    ||||| |||||||||||| | | |||||||| | | | | |||||||| | |||  |||||||||| ||||  |||  ||||||||||||| | || |||    
T  26576021 tatattttaatttatttaaagacgatctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttctacaac 26576120  T
Q  176 aagatacaatagtatttgccctttatttatccatgtactatc 217  Q
    ||||||  |||||||||| ||||||||||| ||| |||||||    
T  26576121 aagatatcatagtatttgacctttatttattcatctactatc 26576162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 4748205 - 4748106
Alignment:
Q  153 ttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgt 252  Q
    |||||| ||||||| | || |||||| ||| |||||||||| ||||||||||| ||| | |||| ||| ||  ||||  || ||||||||||||||||||    
T  4748205 ttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatgctgtaatcaactttaatgt 4748106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 4748318 - 4748269
Alignment:
Q  20 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacac 69  Q
    ||||||||||||||||||| | ||||||||||||  | ||||||||||||    
T  4748318 gacacggacacatcgacaccgctaatgtaaaaaatataggacaccgacac 4748269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 58 - 252
Target Start/End: Complemental strand, 557 - 364
Alignment:
Q  58 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttca 156  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||| |||||||||| | ||||||||||||||| |||| |||| ||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaagatcttaattaagaatcaaaatacata-atatgcatctaacttgagcaaattatttca 459  T
Q  157 ttagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgt 252  Q
    ||| |||||  | |||||||||||||||||||||||| ||||||||||||||| | |||||| |||||| ||||  |||| |||||||||| ||||    
T  458 ttaaaaaaaattctataacaagatacaatagtatttgacctttatttatccatctgctatcg-aaaattgaaatacgttggaatcaactttgatgt 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 27401709 - 27401965
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    |||||||| | |||| ||||||||||||  | |||| | ||||||||||||| | |||| || | ||| ||| ||||||||||||||||||| ||||  |    
T  27401709 acacctgataggacactgacacggacacgccaacaccgctaatgtaaaaaacataggacgccaataccgctatctatatattaatttatttataaaatgt 27401808  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    || |||| ||| |||||||| | |||| |||||||||||| ||||  ||| ||||||| |||||| |||||||||||||||||||| ||||| |||||||    
T  27401809 ctcaattgagaatcaaaatatatacatctgcatctaacttgagcaatttatttcattaaaaaaagttatataacaagatacaatagaatttggcctttat 27401908  T
Q  202 ttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    |||||||| |||||| |||| |   |||   |||||||||||||||||||| |||||    
T  27401909 ttatccatctactattgaaagaaaaaaaaacgttgtaatcaactttaatgtctataa 27401965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 18393758 - 18393571
Alignment:
Q  72 ctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtat 170  Q
    |||| |||||||||||||| ||| |||| ||||||||| ||| ||| |||||| |||||||||| |||||| | ||  ||| || |||| |||||| | |    
T  18393758 ctacttatatattaatttacttataaaatatctaaattgagaatcataatacatacatatgcatttaacttgaacaatttattttattaaaaaaagtttt 18393659  T
Q  171 ataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||   |||||||||||||||||||| |||||    
T  18393658 ataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataa 18393571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 3159736 - 3159963
Alignment:
Q  13 cgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaag 112  Q
    ||||| |||||| ||||| |  |||| | ||||||||||||| | ||||||||||||  |||||| |||| |||||||||||  ||||||||||||| ||    
T  3159736 cgacactgacactgacacgttaacaccgctaatgtaaaaaacataggacaccgacactgctacctgtatactaatttatttatgaaagatctaaattgag 3159835  T
Q  113 agtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgt 211  Q
    | |||||         |||| ||||||||| ||||  ||| ||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||| |    
T  3159836 aatcaaa---------tatgtatctaacttgagcaatttatttcattaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatct 3159926  T
Q  212 actatcgaaaaatttaaatgtgttgtaatcaacttta 248  Q
    | ||||||||||||||||   ||||||||||||||||    
T  3159927 aatatcgaaaaatttaaacacgttgtaatcaacttta 3159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 248
Target Start/End: Complemental strand, 2875532 - 2875409
Alignment:
Q  126 acatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaat 224  Q
    ||||||| ||||||||| ||||  ||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  2875532 acatatgtatctaacttgagcaatttagttcattaaaaaaaggtttataacaagatacaatagtatttggcctttatttatccatctactattgaaaaat 2875433  T
Q  225 ttaaatgtgttgtaatcaacttta 248  Q
    |||||   ||||||||||||||||    
T  2875432 ttaaacacgttgtaatcaacttta 2875409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 2796200 - 2796326
Alignment:
Q  126 acatatgcatctaactt-agcagattacttcatt---agaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaa 221  Q
    ||||||||||||||||| ||||  ||| ||||||   | |||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  2796200 acatatgcatctaacttgagcaatttatttcattaaaaaaaaaaggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaa 2796299  T
Q  222 aatttaaatgtgttgtaatcaacttta 248  Q
    |||||||||  ||||||||||||||||    
T  2796300 aatttaaatacgttgtaatcaacttta 2796326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 2889859 - 2889764
Alignment:
Q  153 ttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 248  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   |||||| |||||||||    
T  2889859 ttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaacttta 2889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 3145276 - 3145371
Alignment:
Q  153 ttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 248  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   |||||| |||||||||    
T  3145276 ttcattaaaaaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaacttta 3145371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 15850732 - 15850511
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||||| ||| | |||||| |||||||||||| |||||||||  | |||||||||||||  ||  |||||||||||||||||| | |   |    
T  15850732 acacctgacacgacactgatatggacacttcgacactgttagtgtaaaaaatataggacaccgacaccattatgtatatattaatttatttatagatagt 15850633  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||| | | | |||||||||| | ||| | |||||| || |||| |||| |||||||||||||| |||| |||||||||  | |||||||| | |||||    
T  15850632 ctaaaatgaaaatcaaaatacatatataagtatctaatttgagcaaattatttcattagaaaaagttataaaacaagatatcacagtatttgacatttat 15850533  T
Q  202 ttatccatgtactatcgaaaaa 223  Q
    |||| ||| ||||||| |||||    
T  15850532 ttattcatctactatcaaaaaa 15850511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 28867194 - 28867364
Alignment:
Q  23 acggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaata 122  Q
    ||||||||||||||||   ||||||| ||||| |  |||||| ||||  ||| ||||||||||||||||||| |||| || |||||| ||| ||||||||    
T  28867194 acggacacatcgacacaactaatgtataaaacataagacaccaacactactatctatatattaatttatttataaaacatttaaattgagaatcaaaata 28867293  T
Q  123 caaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtattt 192  Q
    || | ||||||||||||||| || |  ||| ||||||| |||||| ||||| |||||||| ||||| ||||    
T  28867294 catatatatgcatctaacttaagtaatttatttcattaaaaaaagatatatcacaagatataatagcattt 28867364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 1225942 - 1226200
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||||| | | |||||||| |||||||  ||||| ||||| |  |  ||||| |||||| | || |||||| ||||||||||| | | | |    
T  1225942 acacctgacacgacattaatacggacacgtcgacaccattaatataaaatatttacgacactgacaccaccacatatatagtaatttatttatagagggt 1226041  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactta-gcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||| | | | |||||||||| |  ||  ||| ||| ||| |||  ||| ||||||  |||||| |||| |||||||||| | ||||||||  ||||||    
T  1226042 ctaaaatgaaaatcaaaatacatatgtaaacatataaattaagcaatttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttat 1226141  T
Q  202 ttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaacc 261  Q
    |||| ||| ||||||| |||||||||||  ||||||||||||||||||| | ||||||||    
T  1226142 ttattcatctactatc-aaaaatttaaaaatgttgtaatcaactttaatttctataaacc 1226200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 28869758 - 28869927
Alignment:
Q  23 acggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaata 122  Q
    |||||||||||||||| | ||| ||||||| | |  |||||  ||||  ||| ||||||||||||||||||| |||| || |||||| ||| ||||||||    
T  28869758 acggacacatcgacacagctaacgtaaaaa-cataagacacaaacactactatctatatattaatttatttataaaatatttaaattgagaatcaaaata 28869856  T
Q  123 caaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtattt 192  Q
    || ||||||||||||||||| |  |  ||| ||||||| |||||| ||||| |||||||| ||||| ||||    
T  28869857 catacatatgcatctaacttaaataatttatttcattaaaaaaagatatatcacaagatataatagcattt 28869927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 13097405 - 13097468
Alignment:
Q  78 atatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaact 141  Q
    ||||||||||||||||| |||| ||||||||| ||| |||||||||| ||||||||||||||||    
T  13097405 atatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcatctaact 13097468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 37855085 - 37855266
Alignment:
Q  42 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaact 141  Q
    ||||||||||||  | ||||||||||||| |||| ||||| || ||||||||| | | | |||||| ||| | | | |||||| | |||  ||||||| |    
T  37855085 taatgtaaaaaatataggacaccgacaccgctacatatatgttcatttatttaaagacggtctaaaataaaaattataatacatatataaacatctaatt 37855184  T
Q  142 t-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaa 222  Q
    | || |  ||| ||||| |||||||| |||  ||||||||| ||||||||||  ||||||||||| ||| ||||||| ||||    
T  37855185 tgagaaatttatttcatgagaaaaagttatgcaacaagatataatagtatttaacctttatttattcatctactatcaaaaa 37855266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 18603317 - 18603242
Alignment:
Q  19 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    |||||| ||||| ||||||| |||| |||||||||  | |||||||| ||||||||| || || ||||||||||||    
T  18603317 tgacacagacacttcgacaccgttagtgtaaaaaatataggacaccggcacctctacatacatgttaatttattta 18603242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 209151 - 209325
Alignment:
Q  77 tatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaacttagcagattacttcattagaaaaaggtatataaca 176  Q
    |||||||||||||||||| |||| ||||||||| ||| |||||||||| |||||||||||||||| ||||  ||| ||||||| |||||| | |||||||    
T  209151 tatatattaatttatttataaaatatctaaattgagaatcaaaatacatacatatgcatctaact-agcaatttatttcattaaaaaaagttctataaca 209249  T
Q  177 agatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgt 252  Q
    | |||||| | |||||| ||||||||||||||| ||| |||||||||||||||   |||||||| |||||||||||    
T  209250 aaatacaacaatatttggcctttatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgt 209325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 27993866 - 27994051
Alignment:
Q  81 tattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaaga 179  Q
    |||||||||||||| ||||||| |||| ||||| |||||||||| |||||||||| |||||| ||||  ||| ||||||| | |||| | ||||||||||    
T  27993866 tattaatttatttataaaagatataaactaagaatcaaaatacatacatatgcatttaacttgagcaatttatttcattaaataaagttctataacaaga 27993965  T
Q  180 tacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtg---ttgtaatcaactttaatgtttataaaccc 262  Q
    |||||||| | |||  |||||||||||||| ||| |||||||||||||||  ||   ||||||| ||||||||||| |||||||||    
T  27993966 tacaatagcaattgatctttatttatccatctaccatcgaaaaatttaaaaatgcatttgtaataaactttaatgtctataaaccc 27994051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 255
Target Start/End: Complemental strand, 37338984 - 37338786
Alignment:
Q  58 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttca 156  Q
    |||||||| ||||  ||| ||||| |||||||||||| | |   |||||||| | | |||||||||| | ||| ||||||||||| |||| |||| ||||    
T  37338984 ggacaccggcaccgttacatatatgttaatttatttatagacagtctaaattgaaaatcaaaatacatatataagcatctaacttgagcaaattatttca 37338885  T
Q  157 ttagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgttta 255  Q
    |||||||| | |||  |||||||||  |||||||||| ||||||||||| ||| ||||||| ||||| |||||  |||| | |||||||||||||||||    
T  37338884 ttagaaaatgttatcaaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaactttaatgttta 37338786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 252
Target Start/End: Complemental strand, 11809507 - 11809304
Alignment:
Q  42 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaact 141  Q
    ||||||||||| | |  |||||||||||  |||||||||||||||||||||||       |||||||| |||  ||||||||| |||||||| |||||||    
T  11809507 taatgtaaaaatcataagacaccgacactgctacctatatattaatttattta-------tctaaatttagaagcaaaatacatacatatgcttctaact 11809415  T
Q  142 t-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaat 240  Q
    | ||||  ||| ||||||| |||||  |||||||||||||||||||||||||| ||||||||  | ||| |||  || |||||||||||   ||||||||    
T  11809414 tgagcaatttatttcatta-aaaaatttatataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaat 11809316  T
Q  241 caactttaatgt 252  Q
    ||| ||||||||    
T  11809315 caaatttaatgt 11809304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 27616210 - 27616467
Alignment:
Q  2 tacacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaaga 101  Q
    |||||||||||||| | |||||||||||  ||||||| ||||||||||||||    ||||||||||||| |||| | ||| |||||||||||| |   |     
T  27616210 tacacctgacacgatactgacacggacatgtcgacaccgttaatgtaaaaaatacaggacaccgacaccgctacatgtatgttaatttatttataggtgg 27616309  T
Q  102 tctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgcccttta 200  Q
    |||||| | | | ||||| |||  ||||| |||||| |||| ||||| ||| || ||||||| ||| | || |||||||||  |||||||||| | ||||    
T  27616310 tctaaaatgaaaatcaaagtacgtacataagcatcttacttgagcagtttatttaattagaacaagttctaaaacaagatatcatagtatttgactttta 27616409  T
Q  201 tttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    ||||| ||| |||||||  ||||  ||||  |||| |||||||||||||||| |||||    
T  27616410 tttatacatctactatcagaaaagctaaaaatgttataatcaactttaatgtctataa 27616467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 258
Target Start/End: Complemental strand, 11820752 - 11820549
Alignment:
Q  48 aaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agca 146  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||       || |||||  ||  ||||||||| ||||||||||||||||| ||||    
T  11820752 aaaaaacataggacaccgacaccactacctatatattaatttattta-------tcaaaattgcgaagcaaaatacatacatatgcatctaacttgagca 11820660  T
Q  147 gattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactt 246  Q
      ||| ||||||  |||||| | ||| |||| ||||||||| |||||  ||||||||||  || ||||||  |||| ||||||  ||||||||||| |||    
T  11820659 atttatttcattc-aaaaagttctatgacaacatacaatagcatttgagctttatttatttatctactattaaaaattttaaaaatgttgtaatcatctt 11820561  T
Q  247 taatgtttataa 258  Q
    |||||| |||||    
T  11820560 taatgtctataa 11820549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 9729969 - 9729902
Alignment:
Q  185 tagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgt 252  Q
    |||||||||  |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  9729969 tagtatttggactttatttatccacctactatcgaaaaatttaaatgcgttgtaatcaactttaatgt 9729902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 9730144 - 9730062
Alignment:
Q  42 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaataca 124  Q
    ||||||||||||  | | |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||||||    
T  9730144 taatgtaaaaaatatagaacactgacaccgctacctatatattaatttatttataaaagatctaaattaagaaccaaaataca 9730062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 11817064 - 11816926
Alignment:
Q  58 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttca 156  Q
    ||||||||||  | |||||||||||||||||||||||       |||||||| |||  ||||||||| ||||| ||||||||| | ||||  ||| ||||    
T  11817064 ggacaccgacgtcgctacctatatattaatttattta-------tctaaattgagaagcaaaatacatacataagcatctaacatgagcaatttatttca 11816972  T
Q  157 ttagaaaaaggtatataacaagatacaatagtatttgccctttattt 203  Q
    ||| |||||  |||||||||||||||||| ||||||| |||||||||    
T  11816971 tta-aaaaatttatataacaagatacaatcgtatttgacctttattt 11816926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 43837497 - 43837406
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    |||||| |||| ||| |||||||||||| ||||||||| |||||||||||||   |||||  |||||| ||||  |||||||||||||||||    
T  43837497 acaccttacacaacactgacacggacacctcgacactgctaatgtaaaaaactcaggacattgacaccactacacatatattaatttattta 43837406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 5741583 - 5741657
Alignment:
Q  20 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    ||||| |||||||| |||||||||||||||||||| | | ||||||||||| ||||  ||||||||||| |||||    
T  5741583 gacactgacacatcaacactgttaatgtaaaaaacttagaacaccgacaccgctacacatatattaattaattta 5741657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 32716635 - 32716533
Alignment:
Q  156 attagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgttta 255  Q
    |||| |||||| | || |||||||||||||||||||||  |||||||||| |||  |||||||||||| |||||  || || |||||| |||||||| ||    
T  32716635 attaaaaaaagttctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtcta 32716536  T
Q  256 taa 258  Q
    |||    
T  32716535 taa 32716533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 11812759 - 11812686
Alignment:
Q  21 acacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    |||| ||||| | ||||| | ||||||||||||| | ||||||||||||  |||||||||||||||||||||||    
T  11812759 acacagacacgttgacaccgctaatgtaaaaaacataggacaccgacacagctacctatatattaatttattta 11812686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 45216191 - 45216141
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaa 53  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||    
T  45216191 acacctgacacgacactgacacggacacgtcgacaccgctaatgtaaaaaa 45216141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 6439784 - 6439873
Alignment:
Q  161 aaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaat 250  Q
    |||||| ||||  ||||||||| |||||||||| | | ||||||| ||  |||||||||||||  ||||  |||||||||||||||||||    
T  6439784 aaaaagttataacacaagatacgatagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatcaactttaat 6439873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 48598361 - 48598401
Alignment:
Q  168 tatataacaagatacaatagtatttgccctttatttatcca 208  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  48598361 tatataacacgatacaatagtatttgacctttatttatcca 48598401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 11811077 - 11810991
Alignment:
Q  116 caaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatt 202  Q
    ||||||||| |||||||| |||||||| ||||  ||| ||||||| |||||  ||| ||||||||||||||| |||||| ||||||||    
T  11811077 caaaatacatacatatgcctctaacttgagcaatttatttcatta-aaaaatttatctaacaagatacaataatatttgacctttatt 11810991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 11814636 - 11814584
Alignment:
Q  34 gacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaa 86  Q
    ||||| ||||||||||||||| | ||||||||||||   ||||||||||||||    
T  11814636 gacaccgttaatgtaaaaaacataggacaccgacactgttacctatatattaa 11814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 25445505 - 25445549
Alignment:
Q  180 tacaatagtatttgcccttt-atttatccatgtactatcgaaaaa 223  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||    
T  25445505 tacaatagtatttggccttttatttatccatctactatcgaaaaa 25445549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 48598252 - 48598292
Alignment:
Q  65 gacacctctacctatatattaatttatttacaaaagatcta 105  Q
    |||||| ||| ||||||||||||||||||| ||||||||||    
T  48598252 gacaccactatctatatattaatttatttataaaagatcta 48598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 32676893 - 32676657
Alignment:
Q  20 gacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaa 119  Q
    ||||| ||||| ||||||| | ||||||||||||  | |||||||||| |  |||| ||||| |||||||||||  | | | |||||| | | | |||||    
T  32676893 gacactgacacgtcgacaccgctaatgtaaaaaaaataggacaccgaccctgctacatatatgttaatttatttttagacggtctaaaatgaaaatcaaa 32676794  T
Q  120 atacaaacatatgcatctaacttagcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcga 219  Q
    ||||| ||||| |||||||| | ||||  ||| |||||||||||||| |||| |||||||||  ||| ||||||  | |||||||| ||| ||||||| |    
T  32676793 atacatacataagcatctaattgagcaatttatttcattagaaaaagttataaaacaagatatcatattatttgatc-ttatttattcatctactatcaa 32676695  T
Q  220 aaaatttaaatgtgttgtaatcaactttaatgtttata 257  Q
    |||| |||||  |||| |||||||||||||||| ||||    
T  32676694 aaaagttaaaaatgttataatcaactttaatgtctata 32676657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 4111966 - 4112040
Alignment:
Q  66 acacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaac 140  Q
    ||||| |||| ||||||||||||||| || |||||||||||||| ||| |||||||||| |||||||||||||||    
T  4111966 acaccgctacttatatattaatttatatataaaagatctaaattgagaatcaaaatacatacatatgcatctaac 4112040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 40837692 - 40837889
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||| | |||||||||||| | || || | || |||||||||  |  ||||| |||||| |||  ||||| |||||||||||| | | | |    
T  40837692 acacctgacacgataatgacacggacactttgataccgctagtgtaaaaaatataagacactgacaccgctagatatatgttaatttatttatatacggt 40837791  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgcccttt 199  Q
    ||||| | | | |||||||||| | ||| ||||||||||| |||| |||| |||||||||||||| | || |||||||||   ||||||||| |||||    
T  40837792 ctaaaatgaaaatcaaaatacatatataagcatctaacttgagcaaattatttcattagaaaaagttctaaaacaagatattgtagtatttgaccttt 40837889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 41815871 - 41815782
Alignment:
Q  19 tgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaatt 109  Q
    |||||||||||  | ||||| | ||||||||||||  | ||||||||||||| |||| |||||||||||||||||| |||||||| |||||    
T  41815871 tgacacggacaattagacaccgctaatgtaaaaaaa-taggacaccgacaccgctacatatatattaatttatttataaaagatccaaatt 41815782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 38989374 - 38989299
Alignment:
Q  154 tcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaa 229  Q
    ||||||||||||| | || |||||||||  |||||||||| | ||||||||| ||| ||||||| ||| |||||||    
T  38989374 tcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaa 38989299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 32593718 - 32593819
Alignment:
Q  42 taatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaact 141  Q
    ||||||||||| | | |||||| |||||| |||||| |||| ||||||||||| ||| ||||||||||| || |||||||||| ||||||||||||||||    
T  32593718 taatgtaaaaaccataggacactgacaccgctacctgtatactaatttatttataaatgatctaaattatgaatcaaaatacacacatatgcatctaact 32593817  T
Q  142 ta 143  Q
    ||    
T  32593818 ta 32593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 32593896 - 32593964
Alignment:
Q  186 agtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgttta 255  Q
    |||||||  ||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||    
T  32593896 agtatttagcctttatttatccatctactctcaaaaaatttaaatgtgttgtaatcaa-tttaatgttta 32593964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 54305542 - 54305633
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    ||||||||||| ||| |||||||||||| ||||||  | |||||||||||   | ||||||||||||| |||| ||||| ||||||||||||    
T  54305542 acacctgacacaacactgacacggacacgtcgacatcgctaatgtaaaaattataggacaccgacaccgctacatatatgttaatttattta 54305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 55680627 - 55680714
Alignment:
Q  7 ctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    ||||||||||| ||| |||||||| ||||||| | ||||||||||||  | |||||||||||||  ||| ||||| ||||||||||||    
T  55680627 ctgacacgacactgatacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 55680714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 40289277 - 40289207
Alignment:
Q  153 ttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaa 223  Q
    |||||||||||||| | || |||||||||  |||||||||| ||||||||||| ||| ||||||| |||||    
T  40289277 ttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaa 40289207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 658697 - 658632
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgaca 68  Q
    ||||| ||||||||| ||||||||| || || |||||| |||||||||||| || |||||||||||    
T  658697 acacccgacacgacactgacacggatacgtcaacactgctaatgtaaaaaatctaggacaccgaca 658632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 43922217 - 43922128
Alignment:
Q  5 acctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    ||||||||||||| |||||||||||| ||||||| | || |||||||||  | |||||||||||||||||| || || ||||||||||||    
T  43922217 acctgacacgacactgacacggacacttcgacaccgctagtgtaaaaaatataggacaccgacacctctacatacatgttaatttattta 43922128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 21409118 - 21408884
Alignment:
Q  21 acacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaa 120  Q
    |||| ||||||| ||||| ||||||||||||||  | ||| || |||||| |||| ||||| |||||||||||| | | | |||||| | | | ||||||    
T  21409118 acacagacacattgacaccgttaatgtaaaaaatataggatactgacaccgctacatatatgttaatttatttatatacggtctaaaatgaaaatcaaaa 21409019  T
Q  121 tacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcga 219  Q
    |||||| ||| | |||||| || ||||  ||| |||||||||||||  | || || ||||||   ||||||||| ||||||||||| ||| ||||||  |    
T  21409018 tacaaatataagaatctaatttgagcaagttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctactataaa 21408919  T
Q  220 aaaatttaaatgtgttgtaatcaactttaatgttt 254  Q
    |||  |||||  |||| ||||||| | ||||||||    
T  21408918 aaaggttaaaaatgttataatcaattgtaatgttt 21408884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 26565197 - 26565288
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttattta 94  Q
    ||||||||||||||| |||||||||||| ||||||| | ||||||||||||    |||||| ||||||  ||| ||||| ||||||||||||    
T  26565197 acacctgacacgacactgacacggacacttcgacaccgctaatgtaaaaaatacaggacactgacaccgttacatatatgttaatttattta 26565288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 11410624 - 11410789
Alignment:
Q  58 ggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttca 156  Q
    ||||||||||||| |||| ||||| |||||||||||| | | | |||||| | | | |||||||||| |  || ||||||||||| ||||  ||| ||||    
T  11410624 ggacaccgacaccgctacatatatgttaatttatttatatacggtctaaaatgaaaatcaaaatacatatttaagcatctaacttgagcaagttatttca 11410723  T
Q  157 ttagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaa 222  Q
    |||||||||| | || || ||||||   ||||||||  ||||||||||| ||| ||||||| ||||    
T  11410724 ttagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatctactatcaaaaa 11410789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 42718665 - 42718618
Alignment:
Q  211 tactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa 258  Q
    |||||| ||||| |||||||| |||| |||||||||||||||||||||    
T  42718665 tactattgaaaattttaaatgcgttggaatcaactttaatgtttataa 42718618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 12788 - 13012
Alignment:
Q  27 acacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagatctaaattaagagtcaaaatacaaa 126  Q
    ||||| |||||||| ||||||||||||    ||||||||||||| |||| |||||||||||||||||||| |||  ||||| | | | ||||||||||||    
T  12788 acacaccgacactgctaatgtaaaaaatacaggacaccgacaccgctacatatatattaatttatttacagaaggcctaaaatgaaaatcaaaatacaaa 12887  T
Q  127 catatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatt 225  Q
    |||| | || |||||| ||||  ||| |||||   |||||| |  | ||||||||    ||||||||| | ||||||||| ||| ||||||| |||||      
T  12888 cataagaatttaacttgagcaatttatttcatcgaaaaaagttcgaaaacaagatgtcctagtatttgacatttatttattcatctactatcaaaaaagc 12987  T
Q  226 taaatgtgttgtaatcaactttaat 250  Q
    ||||    |||||||||||||||||    
T  12988 taaaaacattgtaatcaactttaat 13012  T

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Target: scaffold0891 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 2560 - 2358
Alignment:
Q  3 acacctgacacgacagtgacacggacacatcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttacaaaagat 102  Q
    ||||||||||||| | |||||||||||  ||| |||   ||||||| |||||   ||||||| ||||  || | |||||||||||||| ||| || ||||    
T  2560 acacctgacacgatactgacacggacatgtcggcaccactaatgtataaaacaaaggacaccaacactcctgcatatatattaattta-ttataagagat 2462  T
Q  103 ctaaattaagagtcaaaatacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttgccctttat 201  Q
    ||||||| |   |||||||||  |||| |||||||| ||| ||||  ||| ||| ||| |||||| |||| || ||||||| ||| |||||| |||||||    
T  2461 ctaaattgattatcaaaatacgtacatgtgcatctaccttgagcaatttatttcttta-aaaaagttataaaataagatacgataatatttgacctttat 2363  T
Q  202 ttatc 206  Q
     ||||    
T  2362 ctatc 2358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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