View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3299_high_10 (Length: 239)
Name: NF3299_high_10
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 42642426 - 42642617
Alignment:
| Q |
29 |
tccaatgtatctaggtaagtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtga |
128 |
Q |
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| T |
42642426 |
tccaatgtatgtaggtaagtggggtgccacttacaaaggctattttatagcagactacattggaagaatcgatcacttaagattacccacgtctgagtga |
42642525 |
T |
|
| Q |
129 |
ttggttagacgcagttgtgctcagtatagtctagtcatattaaagtatatgaaggaaggcatgtaatgctagtatacattatttgttgctaa |
220 |
Q |
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| T |
42642526 |
ttggttagacgcagttgtgctcattatagtctagtcatattaaagtatatgaaggaaggcatgtaatgctagtatacattatttgttgctaa |
42642617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 21354957 - 21354767
Alignment:
| Q |
29 |
tccaatgtatctaggtaagtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtga |
128 |
Q |
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| T |
21354957 |
tccaatgtatgtagataagtggggcgccacttacaaaggctagtttatagcagactacattggaagaatcgatcacttaagattacccacgtctgagtga |
21354858 |
T |
|
| Q |
129 |
ttggttagacgcagttgtgctcagtatagtctagtcatattaaagtatatgaaggaaggcatgtaatgctagtatacattatttgttgctaa |
220 |
Q |
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| T |
21354857 |
ttggttagacgcagttgtgctcagtatagtctagttgtattgaagtatatg-agataagcatctgatgctagtatacattatttgttgctaa |
21354767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 3202725 - 3202903
Alignment:
| Q |
28 |
ttccaatgtatctaggtaagtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtg |
127 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| | ||| ||||||||| || |||||||||||| | |||||||||||| |
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| T |
3202725 |
ttccaatgtatgtaggtaagtggggtgccacttacaaaggctagtttatagcataatacattggaagaaccgttcacttaagatttctcacgtctgagtg |
3202824 |
T |
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| Q |
128 |
attggttagacgcagttgtgctcagtatagtctagtcatattaaagtatatgaaggaaggcatgtaatgctagtataca |
206 |
Q |
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|||||||||| |||||||||||||||| |||||||| |||||||||||||| | |||||| |||||||||||||||| |
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| T |
3202825 |
attggttagatgcagttgtgctcagtacagtctagttatattaaagtatatcgattaaggcaagtaatgctagtataca |
3202903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 19816378 - 19816210
Alignment:
| Q |
40 |
taggtaagtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtgattggttagacg |
139 |
Q |
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||||||||||||||| ||||||||| || | ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19816378 |
taggtaagtggggcgagacttacaaatgcaagtttatagcagactacattggacaaattgatcacttaagattacccacgtctgagtgattggttagacg |
19816279 |
T |
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| Q |
140 |
cagttgtgctcagtatagtctagtcatattaaagtatatgaaggaaggcatgtaatgctagtatacatt |
208 |
Q |
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|||||||||| | |||||| |||| ||||||||||||||| || |||||| ||||||||||||||| |
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| T |
19816278 |
cagttgtgcttaatatagtatagttgtattaaagtatatgagataatgcatgtgatgctagtatacatt |
19816210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 18541256 - 18541123
Alignment:
| Q |
40 |
taggtaagtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtgattggttagacg |
139 |
Q |
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|||||||||||||||||||| |||||||||| |||| |||||||||| || ||| |||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
18541256 |
taggtaagtggggcgccactaacaaaggctagtttaaagcagactacattcgaaaaatcagtcacttaagattacccacgtctgagtgatttgttagacg |
18541157 |
T |
|
| Q |
140 |
cagttgtgctcagtatagtctagtcatattaaagta |
175 |
Q |
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| |||| |||| ||||||| || ||| ||||||| |
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| T |
18541156 |
taattgtcctca--atagtcttgttataataaagta |
18541123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 33640645 - 33640492
Alignment:
| Q |
31 |
caatgtatctaggtaagtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcactt-------aagattacccacgtctg |
123 |
Q |
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| T |
33640645 |
caatgtatttaggtaagtgggg-gtcacttacaaaggctagtttatagcaaactacattgaaaaaatcgatcacttaagaattaagattatccacatcta |
33640547 |
T |
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| Q |
124 |
agtgattggttagacgcagttgtgctcagtatagtctagtcatattaaagtatat |
178 |
Q |
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| T |
33640546 |
aatgattgattagacacaattgtgctcagtatagtctagttatattaaagtatat |
33640492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 18764236 - 18764069
Alignment:
| Q |
50 |
gggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtgattggttagacgcagttgtgct |
149 |
Q |
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|||||||| |||||| || || |||||||| |||| |||||||| |||||| ||||||||| | ||| | |||||||| |||||||||||||||| | |
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| T |
18764236 |
gggcgccatttacaatggttagcttatagcatactatattggaagagtcgatctcttaagattgctcacatatgagtgataggttagacgcagttgtctt |
18764137 |
T |
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| Q |
150 |
cagtatagtctagtc-atattaaagtatatgaaggaaggcatgtaatgctagtatacattatttgttg |
216 |
Q |
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| T |
18764136 |
caatatagtacattatatattgaagtatataaaagaaggcatgtaatgctagtatacattatttgttg |
18764069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 30052652 - 30052747
Alignment:
| Q |
101 |
tcacttaagattacccacgtctgagtgattggttagacgcagttgtgctcagtatagtctagtcatattaaagtatatgaaggaaggcatgtaatg |
196 |
Q |
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| T |
30052652 |
tcacttaaaattatctacgtatgagtgattagttagacgcaattgtgctcggtatagtctagttatattaaagtatattaaataagacatgtaatg |
30052747 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 26185085 - 26184968
Alignment:
| Q |
91 |
gaagaatcgatcacttaagattacccacgtctgagtgattggttagacgcagttgtgctcagtatagtctagtcatattaaagtatatg--aaggaaggc |
188 |
Q |
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|||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||| |||| | ||||| |
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| T |
26185085 |
gaagaatctatcacttaagattatctacgtctgagtgattggctagacgcagttgtgctcaatatagtttagttatattaaagtgtatgtcgactaaggc |
26184986 |
T |
|
| Q |
189 |
atgtaatgctagtataca |
206 |
Q |
| |
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||||||| |||||||||| |
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| T |
26184985 |
atgtaattctagtataca |
26184968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 461673 - 461788
Alignment:
| Q |
46 |
agtggggcgccacttacaaaggctattttatagcagactaccttggaagaatcgatcacttaagattacccacgtctgagtgattggttagacgcagttg |
145 |
Q |
| |
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||||||| |||||||||||||| | |||||| | ||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||| | ||| |
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| T |
461673 |
agtggggtgccacttacaaagggtggtttataatatactacattggaagaaccgattacttaagattgttcacgtctgagtgattggttagacacggtta |
461772 |
T |
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| Q |
146 |
tgctcagtatagtcta |
161 |
Q |
| |
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|||||||||||||||| |
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| T |
461773 |
tgctcagtatagtcta |
461788 |
T |
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