View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3299_high_12 (Length: 229)
Name: NF3299_high_12
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_high_12 |
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| [»] scaffold0695 (3 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: scaffold0695 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 459 - 235
Alignment:
| Q |
5 |
aaggtaattccaatttacaagcctattccaatttacaaacctatcccaaaggtaattcccattgtaaagccaatccattaagattatcatgcttggaaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
459 |
aaggtaattccaatttacaagcctattccaatttacaaacctatcccaaaggtaattcccattgtaaagccaatccattaagattatcatgcttggaaaa |
360 |
T |
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| Q |
105 |
taagtttcattcctaaaagccttttcacataaatagctacacctagctatatcttagtactattttaattgtgtttgcataaattatcctacttatcttg |
204 |
Q |
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| T |
359 |
taagtttcattcctaaaagccttttcacataaatagctacacctagctatatcttagtactattttaattgtgtttgcataaattatcctacttatcttg |
260 |
T |
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| Q |
205 |
tgtaattttttatttggaggaaact |
229 |
Q |
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||||||||||||||||||||||||| |
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| T |
259 |
tgtaattttttatttggaggaaact |
235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0695; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 507 - 449
Alignment:
| Q |
5 |
aaggtaattccaatttacaagcctattccaatttacaaacctatcccaaaggtaattcc |
63 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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| T |
507 |
aaggtaattccaatttacaagcctgttccaatttacaagcctattccaaaggtaattcc |
449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0695; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 537 - 507
Alignment:
| Q |
5 |
aaggtaattccaatttacaagcctattccaa |
35 |
Q |
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| T |
537 |
aaggtaattccaatttacaagcctattccaa |
507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 14083491 - 14083267
Alignment:
| Q |
5 |
aaggtaattccaatttacaagcctattccaatttacaaacctatcccaaaggtaattcccattgtaaagccaatccattaagattatcatgcttggaaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14083491 |
aaggtaattccaatttacaagcctattccaatttacaaacctatcccaaaggtaattcccattgtaaagccaatccattaagattatcatgcttggaaaa |
14083392 |
T |
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| Q |
105 |
taagtttcattcctaaaagccttttcacataaatagctacacctagctatatcttagtactattttaattgtgtttgcataaattatcctacttatcttg |
204 |
Q |
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| T |
14083391 |
taagtttcattcctaaaagccttttcacataaatagctacacctagctatatcttagtactattttaattgtgtttgcataaattatcctacttatcttg |
14083292 |
T |
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| Q |
205 |
tgtaattttttatttggaggaaact |
229 |
Q |
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| T |
14083291 |
tgtaattttttatttggaggaaact |
14083267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 14083539 - 14083481
Alignment:
| Q |
5 |
aaggtaattccaatttacaagcctattccaatttacaaacctatcccaaaggtaattcc |
63 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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| T |
14083539 |
aaggtaattccaatttacaagcctgttccaatttacaagcctattccaaaggtaattcc |
14083481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 14083569 - 14083539
Alignment:
| Q |
5 |
aaggtaattccaatttacaagcctattccaa |
35 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14083569 |
aaggtaattccaatttacaagcctattccaa |
14083539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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