View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3299_high_8 (Length: 249)
Name: NF3299_high_8
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_high_8 |
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| [»] scaffold0695 (1 HSPs) |
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Alignment Details
Target: scaffold0695 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0695
Description:
Target: scaffold0695; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 200 - 45
Alignment:
| Q |
1 |
aaagttctcagtttgccaatttatcattgatgtattctctgaaatctataatgtggttgagaaagaaactcagtaaaattggattgagcaattagaattc |
100 |
Q |
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| T |
200 |
aaagttctcagtttgccaatttatcattgatgtattctctgaaatccataatgtggttgagaaagaaactcactaaaattggattgagcaattagaattc |
101 |
T |
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| Q |
101 |
acaaaagaaattaatcattaacgatgttgaaagatatttcgcgtctataacattgt |
156 |
Q |
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| T |
100 |
acaaaagaaattaatcattaacgatgttgaaagatatttcgcgtctataacattgt |
45 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 14083232 - 14083077
Alignment:
| Q |
1 |
aaagttctcagtttgccaatttatcattgatgtattctctgaaatctataatgtggttgagaaagaaactcagtaaaattggattgagcaattagaattc |
100 |
Q |
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| T |
14083232 |
aaagttctcagtttgccaatttatcattgatgtattctctgaaatccataatgtggttgagaaagaaactcactaaaattggattgagcaattagaattc |
14083133 |
T |
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| Q |
101 |
acaaaagaaattaatcattaacgatgttgaaagatatttcgcgtctataacattgt |
156 |
Q |
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| T |
14083132 |
acaaaagaaattaatcattaacgatgttgaaagatatttcgcgtctataacattgt |
14083077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 14083040 - 14082995
Alignment:
| Q |
192 |
ccgataactatatccgttgaactgtcaatactttcctaaggatctg |
237 |
Q |
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| T |
14083040 |
ccgatagctatatctgttgaactgtcaatactttcctaaggatctg |
14082995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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