View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3299_low_13 (Length: 227)
Name: NF3299_low_13
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 32591742 - 32591937
Alignment:
| Q |
18 |
aatcaaagcaaaatcaacaa-tgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatc |
116 |
Q |
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||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32591742 |
aatcaaatcaaaatcaaaaaatgtacagggtagcaaaagcatccgagtacctggtgataaccggagctggaatcgaagacatcaaacttgcaaagaaatc |
32591841 |
T |
|
| Q |
117 |
atggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32591842 |
atgggttttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
32591937 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 31528188 - 31527994
Alignment:
| Q |
18 |
aatcaaagcaaaatcaacaatgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatca |
117 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31528188 |
aatcaaatcaaaatcaacaatgtacagggtagcaaaagcatccgagtatctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatca |
31528089 |
T |
|
| Q |
118 |
tggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
212 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
31528088 |
tggattttccctggtcaatcttgcaccgttttcgacctctctccggtgaactacaccttcgaagttcaagccatgagtgccgaaaaactgccttt |
31527994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 51825592 - 51825397
Alignment:
| Q |
18 |
aatcaaagcaaaatc-aacaatgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatc |
116 |
Q |
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||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51825592 |
aatcaaatcaaaatccaacaatgtacagggtagcaaaagcatccgagtacctggtgttaaccggagccggaatcgaagacatcaaacttgcaaagaaatc |
51825493 |
T |
|
| Q |
117 |
atggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
212 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
51825492 |
atggattttccctggtcaatcttccactgtcttcgacctctcaccggtgaactacaccttcgaagttcaagccatgagtgccgaaaaactgccttt |
51825397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 37031507 - 37031387
Alignment:
| Q |
92 |
aagacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccat |
191 |
Q |
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||||||||||||||||||||||| |||||||| | || |||||||| ||| | ||||| |||||||||||||| ||||| ||||||||||||||||| || |
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| T |
37031507 |
aagacatcaaacttgcaaagaaagcatggattcttcccggtcaatcctgctctgtcttggacctctcaccggtaaactacaccttcgaagttcaagctat |
37031408 |
T |
|
| Q |
192 |
gagtgctgaaaaactgccttt |
212 |
Q |
| |
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||| || || ||||| ||||| |
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| T |
37031407 |
gagcgcggagaaacttccttt |
37031387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 49213920 - 49213729
Alignment:
| Q |
20 |
tcaaagcaaaatcaacaatgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatcatg |
119 |
Q |
| |
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||||| ||||||||||| ||||| |||| ||||||||||| || || || | ||||| || ||||||||||| ||||| ||||| ||||||| |||| |
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| T |
49213920 |
tcaaaccaaaatcaaca-tgtaccgggtagcaaaagcatcagaatatcttgctataactggtgccggaatcgacgacataaaactccaaaagaaagcatg |
49213822 |
T |
|
| Q |
120 |
gattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
212 |
Q |
| |
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||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
49213821 |
gattttccccggtcaatcatgcacggtcttcgacctttcaccggtgaactataccttcgaagttcaagccatgagtgccgaaaaactcccttt |
49213729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 49209064 - 49208889
Alignment:
| Q |
37 |
atgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatcatggattttccctggtcaat |
136 |
Q |
| |
|
|||||| |||| ||||| ||||| || ||||| |||||||| || |||||||| || || | || |||| ||||||| |||||||||| || ||||||| |
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| T |
49209064 |
atgtaccgggtagcaaaggcatcagaataccttgtgataactggcgccggaattgacgatgtaaagcttgaaaagaaagcatggatttttccaggtcaat |
49208965 |
T |
|
| Q |
137 |
cttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
212 |
Q |
| |
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| T |
49208964 |
cctgcactgtcttcgacctctcaccggtgaactacaccttcgaagttcaagccatgagtgctgaaaaactcccttt |
49208889 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 49192807 - 49192612
Alignment:
| Q |
17 |
aaatcaaagcaaaatcaacaatgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatc |
116 |
Q |
| |
|
|||| ||| |||||||||| ||||||| ||| ||||||||||| | ||||| |||||||||||| ||||||| ||||||| || || ||||||||| | |
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|
| T |
49192807 |
aaattaaatcaaaatcaacgatgtacaaggtagcaaaagcatcacaataccttgtgataaccggaatcggaatcaaagacataaagctcgcaaagaaagc |
49192708 |
T |
|
| Q |
117 |
atggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaactgccttt |
212 |
Q |
| |
|
||||||| | || |||||||| | | ||||||||||||||||||| || || || ||||| ||||||||||| ||||| || || ||||| ||||| |
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| T |
49192707 |
atggattctacccggtcaatcctactccgtcttcgacctctcacctgtaaattacacctttgaagttcaagcaatgagcgcagagaaacttccttt |
49192612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 49203833 - 49203713
Alignment:
| Q |
92 |
aagacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccat |
191 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| | || ||||| || ||| ||||||| |||||||||||||| ||||| ||||||||||||||||| || |
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|
| T |
49203833 |
aagacataaaacttgcaaagaaagcatggattattcccggtcagtcctgctccgtcttggacctctcaccggtaaactacaccttcgaagttcaagctat |
49203734 |
T |
|
| Q |
192 |
gagtgctgaaaaactgccttt |
212 |
Q |
| |
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|||||| || ||||| ||||| |
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| T |
49203733 |
gagtgccgagaaacttccttt |
49203713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 49188996 - 49188876
Alignment:
| Q |
92 |
aagacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccat |
191 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| || |
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|
| T |
49188996 |
aagacatcaaactcaaaaagaaagcatggatttttcccggtcaatcctgcactgtcttggacctctcaccggtaaactacacctttgaagttcaagctat |
49188897 |
T |
|
| Q |
192 |
gagtgctgaaaaactgccttt |
212 |
Q |
| |
|
|||||| || ||||| ||||| |
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|
| T |
49188896 |
gagtgccgagaaacttccttt |
49188876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 29622725 - 29622814
Alignment:
| Q |
107 |
caaagaaatcatggatt-ttccctggtcaatcttgcaccgtcttcgacctct--caccggtgaactataccttcgaagttcaagccatgag |
194 |
Q |
| |
|
||||||||||||| ||| ||||| || ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
29622725 |
caaagaaatcatgaattcttcccagg-caatcctgcaccgtcttcgacctctctcaccggtgaactacaccttcgaagttcaagcaatgag |
29622814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 26757446 - 26757261
Alignment:
| Q |
20 |
tcaaagcaaaatcaacaatgtacagggttgcaaaagcatccgagtacctggtgataaccggagccggaatcgaagacatcaaacttgcaaagaaatcatg |
119 |
Q |
| |
|
||||| |||| |||| |||||| | ||| ||||||||||| || ||||| |||||||||||||| | ||| ||||||||||||| | ||| ||| |||| |
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|
| T |
26757446 |
tcaaatcaaattcaagaatgtataaggtcgcaaaagcatcagaataccttgtgataaccggagcatggatcaaagacatcaaactcgtaaacaaagcatg |
26757347 |
T |
|
| Q |
120 |
gattttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatgagtgctgaaaaact |
206 |
Q |
| |
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|||| | || ||| |||| | || ||| ||| | |||||||| || ||||| |||||| |||||||||| ||||||||||||||||| |
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|
| T |
26757346 |
gattcttcccggtaaatcgtacagcgttttc-aactctcaccagtaaactacaccttcaaagttcaagcaatgagtgctgaaaaact |
26757261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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