View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3299_low_16 (Length: 218)
Name: NF3299_low_16
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 53675201 - 53675387
Alignment:
| Q |
19 |
ccaataacaaaacattattttttcctcaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgtgtttgaaattaattacctgt |
118 |
Q |
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| T |
53675201 |
ccaataacaaaacattattttttccccaattttattgatgatggagacacatatatacttgtatgatttgattcacgtgtgtttgaaattaattacctgt |
53675300 |
T |
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| Q |
119 |
ttggaccaacaacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtcttcatctcact |
208 |
Q |
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| T |
53675301 |
ttggac---caacaagtctgtgcaaattctccaagcacagatataacatatgcttttgcttgcctaagttgtgattgtcttcttctcact |
53675387 |
T |
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