View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3299_low_2 (Length: 414)
Name: NF3299_low_2
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 121 - 279
Target Start/End: Original strand, 32575342 - 32575502
Alignment:
| Q |
121 |
aagacagagttcacagaaatggtgggcctagaactagaaatggtgactgtggtggttgggatgagggatgtccacttacagtattttacag--tatattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
32575342 |
aagacagagttcacagaaatggtgggcctagaactagaaatggtgactgtggtggttgggatgagggatgtccacttacagtattttaccgtctatattt |
32575441 |
T |
|
| Q |
219 |
tagaaaaatataaacaagccatacaaaaggctgagtgcttgtcagtttatttagttactca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32575442 |
tagaaaaatataaacaagccatacaaaaggctgagtgcttgtcagtttatttagttactca |
32575502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 32569692 - 32569802
Alignment:
| Q |
26 |
aagggtcgtgagatttctgacgatgatttaccgcttgttgggaagatgaatgtctgaacgagtttcactctttgctcgaatag-ttttgagtaatgaaga |
124 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| | | |||||||| ||| |
|
|
| T |
32569692 |
aagggtcgtgagattgctgatgatgatttgccgcttgttgggaagatgaatgtatcaacgagtttcactctttgctcgaatagctgtcgagtaatggaga |
32569791 |
T |
|
| Q |
125 |
cagagttcaca |
135 |
Q |
| |
|
| ||||||||| |
|
|
| T |
32569792 |
ccgagttcaca |
32569802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 32614568 - 32614680
Alignment:
| Q |
24 |
gaaagggtcgtgagatttctgacgatgatttaccgcttgttgggaagatgaatgtctgaacgagtttcactctttgctcgaatagtt-ttgagtaatgaa |
122 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||| |||| ||||||||||||| | ||||||||||||| ||||||||||||||| | |||||||| | |
|
|
| T |
32614568 |
gaaatggtcgtgagattgctgacgatgatttgccgcctgttaggaagatgaatgtatcaacgagtttcactttttgctcgaatagttgtcgagtaatgga |
32614667 |
T |
|
| Q |
123 |
gacagagttcaca |
135 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32614668 |
gacagagttcaca |
32614680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 32570356 - 32570416
Alignment:
| Q |
239 |
atacaaaaggctgagtgcttgtcagtttatttagttactcatgtttgtttatatctcatatt |
300 |
Q |
| |
|
||||||||||| |||||| |||||||| || |||||||||| |||||||| ||||||||||| |
|
|
| T |
32570356 |
atacaaaaggc-gagtgcatgtcagttgatctagttactcaggtttgtttgtatctcatatt |
32570416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University