View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3299_low_5 (Length: 252)
Name: NF3299_low_5
Description: NF3299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3299_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 40847802 - 40847576
Alignment:
| Q |
11 |
cagagacgtgtaacatatggccagagcaataactgaatataggcatcattggctctaatacttcatgagacaacatccatagcataagccaaacaaaaag |
110 |
Q |
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| T |
40847802 |
cagaaacgtgtaacatatggcaagagcaataactgaatataggcatcattggctctaatacttcatgaaacaacatccatagcataagccaaacaaaaag |
40847703 |
T |
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| Q |
111 |
gcttctggtggttacgatattattacaagacataagtaattcacggaaaataag-nnnnnnnggt----------tagcctcttgaatgatgaaacttag |
199 |
Q |
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| T |
40847702 |
gcttctggtggttacgatattattacaagacataagtaattcacggaaaataagaaaaaaaaggttagcatctcatagcatcttgaatgatgaaacttag |
40847603 |
T |
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| Q |
200 |
gatgttttacacggaattccctatgcc |
226 |
Q |
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| T |
40847602 |
gatgttttacacggaattcactatgcc |
40847576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 40847389 - 40847341
Alignment:
| Q |
116 |
tggtggttacgatattattacaagacataagtaattcacggaaaataag |
164 |
Q |
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|||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
40847389 |
tggtggttacgatattattacaagacgcaagtactttacggaaaataag |
40847341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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