View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_high_11 (Length: 331)
Name: NF3300_high_11
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 34232447 - 34232147
Alignment:
| Q |
16 |
aagagagattaagggttatgaattataatgaatgatgaagaatgaaatataattgaagatttgtgtgtatatataaatatgaagaggaaagagagaggaa |
115 |
Q |
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| T |
34232447 |
aagagagattaagggttatgaattataatgaatgatgaagaatgaaatataattgaagatttgtgtgtatatataaatatgaagaggaaagagagaggaa |
34232348 |
T |
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| Q |
116 |
agaggtgtggttttttctaagaaggtgtgtgagtaagtgtaagtggacataacatagattcattgaagacagctaagggaacaaagttaacttggtcaga |
215 |
Q |
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| T |
34232347 |
agaggtgtggttttttctaagaaggtgtgtgagtaagtgtaagtggacataacatagattcattgaagacagctaagggaacaaagttaacttggtcaga |
34232248 |
T |
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| Q |
216 |
gacagacacggatttcattggagtttggagttggagtgaacttgcctagttttttcgtggaaggttctctaaagggtagaaatgtaaagtaggagatatt |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34232247 |
gacagacacggatttcattggaatttggagttggagtgaacttgcctagttttttcgtggaaggttctctaaagggtagaaatgtaaaggaggagatatt |
34232148 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
34232147 |
t |
34232147 |
T |
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