View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_high_15 (Length: 251)
Name: NF3300_high_15
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 248246 - 248484
Alignment:
| Q |
1 |
atcatttttaaagtactatcaatgacatgaaaagtaagaaagccaacacaagattgacaaatcactaaaactaaaaggggactnnnnnnnncccaagaaa |
100 |
Q |
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| T |
248246 |
atcatttttaaagtactatcaatgacatgaaaagtaagaaagccaacacaagattgacaaatcactaaaactaaaaggggactaaaaaaaacccaagaaa |
248345 |
T |
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| Q |
101 |
tgtataataaggggactgaaataatggttttttgaaatgaattgactaaaatttcaattaagttaaaataaagggacaaaaagtgcatttgagcctaaca |
200 |
Q |
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| T |
248346 |
tgtataataaggggactgaaataatggtttt-tgaaatgaattgactaaaatttcgattaatttaaaataaagggacaaaaagtgcatttgagcctaaca |
248444 |
T |
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| Q |
201 |
ttaaatttgacgtgatttttaatagtgtgtttggttctgtg |
241 |
Q |
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| T |
248445 |
ttaaatttgacgtgatttttaa-ggtgtgtttggttctgtg |
248484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 22068886 - 22068929
Alignment:
| Q |
147 |
taaaatttcaattaagttaaaataaagggacaaaaagtgcattt |
190 |
Q |
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| T |
22068886 |
taaaatttcaattaagttaaaataaggggatcaaaagtgcattt |
22068929 |
T |
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