View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_high_18 (Length: 245)

Name: NF3300_high_18
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_high_18
NF3300_high_18
[»] chr1 (32 HSPs)
chr1 (1-123)||(28474734-28474856)
chr1 (139-228)||(33753635-33753724)
chr1 (1-65)||(28446544-28446608)
chr1 (6-65)||(33617644-33617703)
chr1 (6-65)||(5602944-5603003)
chr1 (3-65)||(33401408-33401470)
chr1 (7-65)||(50065478-50065536)
chr1 (136-196)||(46604436-46604496)
chr1 (6-65)||(28476001-28476060)
chr1 (6-47)||(35563378-35563419)
chr1 (1-65)||(3792560-3792624)
chr1 (1-65)||(39650196-39650260)
chr1 (139-198)||(8323439-8323498)
chr1 (139-198)||(31815770-31815829)
chr1 (139-190)||(50315318-50315369)
chr1 (139-189)||(33755325-33755375)
chr1 (138-198)||(8322520-8322580)
chr1 (139-198)||(9627581-9627640)
chr1 (139-190)||(24437074-24437125)
chr1 (139-198)||(31809989-31810048)
chr1 (6-65)||(45691067-45691126)
chr1 (6-65)||(45691209-45691268)
chr1 (6-65)||(45691351-45691410)
chr1 (6-65)||(50069253-50069312)
chr1 (140-198)||(9626469-9626527)
chr1 (142-196)||(40767618-40767672)
chr1 (20-65)||(11821160-11821205)
chr1 (139-196)||(12095877-12095934)
chr1 (139-196)||(22684152-22684209)
chr1 (134-191)||(26734421-26734478)
chr1 (1-38)||(35563532-35563569)
chr1 (137-198)||(42301620-42301681)
[»] chr7 (18 HSPs)
chr7 (134-228)||(27161965-27162059)
chr7 (1-62)||(5186-5247)
chr7 (1-65)||(19365409-19365473)
chr7 (139-228)||(27160305-27160394)
chr7 (137-191)||(46245120-46245174)
chr7 (139-196)||(46246577-46246634)
chr7 (9-65)||(5061750-5061806)
chr7 (1-61)||(38386178-38386238)
chr7 (135-198)||(11669837-11669900)
chr7 (6-65)||(28139454-28139513)
chr7 (139-196)||(12178483-12178540)
chr7 (16-65)||(33839471-33839520)
chr7 (18-65)||(10527015-10527062)
chr7 (10-65)||(28138759-28138814)
chr7 (133-186)||(28556240-28556293)
chr7 (20-65)||(42548161-42548206)
chr7 (10-66)||(26009368-26009424)
chr7 (134-198)||(41593203-41593267)
[»] chr5 (22 HSPs)
chr5 (129-198)||(35931348-35931417)
chr5 (6-65)||(34016002-34016061)
chr5 (8-65)||(759160-759217)
chr5 (140-228)||(35929523-35929611)
chr5 (1-65)||(28677886-28677950)
chr5 (1-59)||(6706049-6706107)
chr5 (6-52)||(40266607-40266653)
chr5 (17-65)||(17636344-17636392)
chr5 (1-65)||(17644614-17644678)
chr5 (139-191)||(38624716-38624768)
chr5 (18-65)||(6158973-6159020)
chr5 (6-67)||(22252272-22252333)
chr5 (20-61)||(30491828-30491869)
chr5 (139-196)||(38626172-38626229)
chr5 (6-51)||(40266385-40266430)
chr5 (6-46)||(33037400-33037440)
chr5 (1-65)||(34017633-34017697)
chr5 (2-65)||(1145891-1145954)
chr5 (7-65)||(1145141-1145199)
chr5 (8-62)||(5506712-5506766)
chr5 (1-39)||(33144198-33144236)
chr5 (139-196)||(16308565-16308622)
[»] chr2 (27 HSPs)
chr2 (1-65)||(8273245-8273309)
chr2 (1-51)||(8277402-8277452)
chr2 (134-196)||(40304764-40304826)
chr2 (138-198)||(28563955-28564015)
chr2 (4-65)||(25389867-25389928)
chr2 (139-196)||(44097355-44097412)
chr2 (1-65)||(22787999-22788063)
chr2 (139-191)||(40303293-40303345)
chr2 (139-191)||(45499305-45499357)
chr2 (141-196)||(7317392-7317447)
chr2 (139-198)||(22054334-22054393)
chr2 (6-65)||(37893027-37893086)
chr2 (139-196)||(6844099-6844156)
chr2 (137-198)||(22060160-22060221)
chr2 (141-198)||(42928937-42928994)
chr2 (139-196)||(45493034-45493091)
chr2 (139-196)||(45500776-45500833)
chr2 (140-191)||(22060487-22060538)
chr2 (142-196)||(22053128-22053182)
chr2 (18-52)||(38147103-38147137)
chr2 (1-62)||(11712961-11713022)
chr2 (20-65)||(20685006-20685051)
chr2 (20-65)||(24929366-24929411)
chr2 (129-198)||(40128927-40128996)
chr2 (139-191)||(8803308-8803360)
chr2 (1-65)||(18387241-18387305)
chr2 (1-65)||(22727662-22727726)
[»] chr8 (17 HSPs)
chr8 (1-65)||(5967251-5967315)
chr8 (6-65)||(34279580-34279639)
chr8 (15-65)||(9418587-9418637)
chr8 (136-193)||(45448497-45448554)
chr8 (139-198)||(357977-358036)
chr8 (10-65)||(31762241-31762296)
chr8 (140-197)||(21142480-21142537)
chr8 (20-65)||(33220820-33220865)
chr8 (139-228)||(7272900-7272989)
chr8 (17-65)||(43641003-43641051)
chr8 (6-65)||(3588564-3588623)
chr8 (139-198)||(17706165-17706224)
chr8 (139-196)||(3158039-3158096)
chr8 (139-196)||(39884616-39884673)
chr8 (139-196)||(39886078-39886135)
chr8 (139-191)||(359321-359373)
chr8 (1-65)||(37687326-37687390)
[»] chr3 (27 HSPs)
chr3 (1-65)||(15040681-15040745)
chr3 (1-65)||(53814575-53814639)
chr3 (3-59)||(7665739-7665795)
chr3 (135-191)||(48568537-48568593)
chr3 (134-191)||(31796841-31796898)
chr3 (139-196)||(41081802-41081859)
chr3 (1-65)||(6162696-6162760)
chr3 (20-64)||(13843626-13843670)
chr3 (139-191)||(40499259-40499311)
chr3 (137-188)||(31795371-31795422)
chr3 (142-197)||(33781495-33781550)
chr3 (6-65)||(53824291-53824349)
chr3 (139-197)||(32558919-32558977)
chr3 (20-65)||(4969875-4969920)
chr3 (8-65)||(35069467-35069524)
chr3 (134-191)||(41083278-41083335)
chr3 (1-65)||(50663875-50663939)
chr3 (1-65)||(53827675-53827739)
chr3 (139-190)||(48566996-48567047)
chr3 (140-190)||(24612279-24612329)
chr3 (142-196)||(30700299-30700353)
chr3 (139-173)||(32559908-32559942)
chr3 (15-65)||(40517551-40517601)
chr3 (141-198)||(24613612-24613669)
chr3 (18-51)||(30533234-30533267)
chr3 (20-65)||(44430418-44430463)
chr3 (9-65)||(39645774-39645830)
[»] chr6 (12 HSPs)
chr6 (9-65)||(17436563-17436619)
chr6 (1-65)||(31522549-31522613)
chr6 (1-66)||(32274183-32274248)
chr6 (1-65)||(14153354-14153418)
chr6 (6-65)||(32275790-32275849)
chr6 (16-65)||(24326944-24326993)
chr6 (134-198)||(842181-842245)
chr6 (142-198)||(30321164-30321220)
chr6 (1-65)||(35060909-35060973)
chr6 (139-198)||(11065654-11065713)
chr6 (139-196)||(1443417-1443474)
chr6 (137-198)||(7800237-7800298)
[»] chr4 (22 HSPs)
chr4 (1-62)||(24974160-24974221)
chr4 (1-62)||(36501879-36501940)
chr4 (142-196)||(33607471-33607525)
chr4 (134-196)||(33609346-33609408)
chr4 (130-191)||(4907468-4907529)
chr4 (1-65)||(34235718-34235782)
chr4 (6-48)||(27992132-27992174)
chr4 (141-198)||(35786680-35786737)
chr4 (1-66)||(51719788-51719853)
chr4 (1-65)||(33164519-33164583)
chr4 (1-65)||(55527927-55527991)
chr4 (139-198)||(4906129-4906188)
chr4 (139-198)||(4931998-4932057)
chr4 (20-65)||(628088-628133)
chr4 (139-191)||(4933338-4933390)
chr4 (9-65)||(12586820-12586875)
chr4 (139-191)||(29756272-29756324)
chr4 (139-198)||(29757608-29757667)
chr4 (6-65)||(45237411-45237470)
chr4 (141-198)||(22674154-22674211)
chr4 (134-198)||(23703863-23703927)
chr4 (15-59)||(40923922-40923966)
[»] scaffold0129 (1 HSPs)
scaffold0129 (139-198)||(4257-4316)
[»] scaffold1763 (1 HSPs)
scaffold1763 (3-65)||(380-442)
[»] scaffold0246 (1 HSPs)
scaffold0246 (15-65)||(2881-2931)
[»] scaffold1118 (1 HSPs)
scaffold1118 (150-191)||(2423-2464)
[»] scaffold0280 (1 HSPs)
scaffold0280 (139-196)||(12131-12188)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 28474856 - 28474734
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattcgcttggaaatgacgtaggaggttattggcatggaa 100  Q
    |||| ||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||||    
T  28474856 cgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggtaatgagcagaattctcttggaaatgacgttagaggttattggcatggaa 28474757  T
Q  101 ggaagaattggagaatgaatgat 123  Q
    ||||| |||||||||||||||||    
T  28474756 ggaaggattggagaatgaatgat 28474734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 33753635 - 33753724
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaagnnnnnnngttgcgagtcaacccctgtattt 228  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||    
T  33753635 ggcttacataggtaaaaggtccctgtaagttcgcgagattttggttttcgtccttgtaagtttttttgttgcgagacaacccctgtattt 33753724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28446544 - 28446608
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  28446544 cgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattc 28446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 33617703 - 33617644
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  33617703 gggcatttcggtcatttactttgagaatgagcgaatccatttgggtaatgagcataattc 33617644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 5603003 - 5602944
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  5603003 gggcattttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaattc 5602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 33401470 - 33401408
Alignment:
Q  3 taagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||||||||||||| |||||||||||||||||||  || |||||| |||||    
T  33401470 taagggcatttcggtcatttactttgagaatgagcgaatccatttgactaatgagcaaaattc 33401408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 50065536 - 50065478
Alignment:
Q  7 ggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||    
T  50065536 ggcatttcggtcatttactttgggaatgagcgattccattttggtaatgagtagaattc 50065478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 46604436 - 46604496
Alignment:
Q  136 tttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||||||||| |||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  46604436 tttggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtccttgta 46604496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 28476001 - 28476060
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||| |||||||||||| ||||||||| | ||||||||||| ||||||||||||    
T  28476001 gggcatttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 28476060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 35563419 - 35563378
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccattt 47  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  35563419 gggcatttcagtcatttactttgggaatgagcgaatccattt 35563378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3792624 - 3792560
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||| || | |||||||||| |||||||||| | ||||||||| ||||||||||||    
T  3792624 cgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39650260 - 39650196
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| || |||||||||| |||||||||||| |||||| |||| ||||||||||||    
T  39650260 cgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 8323498 - 8323439
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  8323498 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 8323439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 31815829 - 31815770
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  31815829 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 31815770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 50315318 - 50315369
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtc 190  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||    
T  50315318 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtc 50315369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 33755375 - 33755325
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgt 189  Q
    |||||||||| ||||||||||  |||||||||| |||||||||||||||||    
T  33755375 ggcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgt 33755325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 8322520 - 8322580
Alignment:
Q  138 tggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    ||||||||||| |||||||||| |||||||||||||   |||| |||||||||| ||||||    
T  8322520 tggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgtaag 8322580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 9627640 - 9627581
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| ||||||||||||||||||||||||   |||| |||||||| | ||||||    
T  9627640 ggcttaaatatgtaaaaggtctctgtaagttcgcgcattttttgttttcgttcctgtaag 9627581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 24437074 - 24437125
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtc 190  Q
    |||||||||| |||||||||| ||||||||||||| | |||| |||||||||    
T  24437074 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttttcgtc 24437125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 31809989 - 31810048
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   |||| |||||||||| ||||||    
T  31809989 ggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgtaag 31810048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 45691067 - 45691126
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| || | ||||||||||||||||||||| ||||||| ||| |||||| |||||    
T  45691067 gggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 45691209 - 45691268
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| || | ||||||||||||||||||||| ||||||| ||| |||||| |||||    
T  45691209 gggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 45691351 - 45691410
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| || | ||||||||||||||||||||| ||||||| ||| |||||| |||||    
T  45691351 gggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 50069253 - 50069312
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| || ||||||||||||||||||||||  |  |||||||| ||||||||||||    
T  50069253 gggcattttggacatttactttgggaatgagcgatgctgtttgggtaatgagcagaattc 50069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 9626469 - 9626527
Alignment:
Q  140 gcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    ||||||||| |||||||||| |||||||||||||   |||| |||||||||| ||||||    
T  9626469 gcttaaatatgtaaaaggtccctgtaagttcgcgtattttttgttttcgtccctgtaag 9626527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 40767618 - 40767672
Alignment:
Q  142 ttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||| |||||||||||||||||||| ||| | |||||||||| |||| ||||    
T  40767618 ttaaatatgtaaaaggtctctgtaagtttgcgcgtttttggttttagtccctgta 40767672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 11821205 - 11821160
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||| |||| |||||||| || ||||||||||||    
T  11821205 tttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 12095877 - 12095934
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| ||||||||||| | | |||||||||| |||| ||||    
T  12095877 ggcttaaataagtaaaaggtccctgtaagttcgtgcgtttttggttttagtccctgta 12095934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 22684209 - 22684152
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||| |||| ||||||||||  |||||||||||| | ||||||||||||||| ||||    
T  22684209 ggctttaatatgtaaaaggtccttgtaagttcgcgtgtttttggttttcgtccatgta 22684152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 26734421 - 26734478
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||| |||||||||| ||||||||||  ||||||||||||   |||||||||||||||    
T  26734421 ttttaggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggttttcgtcc 26734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35563569 - 35563532
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcg 38  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  35563569 cgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 42301681 - 42301620
Alignment:
Q  137 ttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||||| |||||||||  || ||||||||||   |||| |||||||||||||||||    
T  42301681 ttggcttaaatatgtaaaaggttcctctaagttcgcgtattttttgttttcgtccttgtaag 42301620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 27162059 - 27161965
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaagnnnnnnngttgcgagtcaacccctgtattt 228  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||    
T  27162059 ttttaggcttaaatatgtaaaaggtccctgtaagttcgcgagattttggttttcgtccttgtaagtttttttgttgcgagacaacccctgtattt 27161965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5186 - 5247
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaa 62  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5186 cgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19365409 - 19365473
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||    
T  19365409 cgtaggggtatttcggtcattttatttgggaatgagcgaatccatttaggtaatgagcagaattc 19365473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 27160305 - 27160394
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaagnnnnnnngttgcgagtcaacccctgtattt 228  Q
    |||||||||| ||||||||||  |||||||||| ||||||||||||||||||| ||||||       ||||| || ||||||||||||||    
T  27160305 ggcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgtccctgtaagtttttttgttgcaagacaacccctgtattt 27160394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 46245120 - 46245174
Alignment:
Q  137 ttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  46245120 ttggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 46245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 46246634 - 46246577
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||    
T  46246634 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgta 46246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 5061750 - 5061806
Alignment:
Q  9 catttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||| ||||||| ||||| |||||| ||||||||||||||| ||||||||||||    
T  5061750 catttcgttcatttattttggaaatgagtgaatccatttgggtaatgagcagaattc 5061806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38386238 - 38386178
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcaga 61  Q
    |||| |||||||||  ||||||||||||| ||||||||||||||||||| || ||||||||    
T  38386238 cgtaggggcatttcaatcatttactttggaaatgagcgaatccatttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 11669837 - 11669900
Alignment:
Q  135 ttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||||||| ||||| |||| ||||||||||||  | ||||||||||||||| ||||||    
T  11669837 ttttggcttaaatatgtaaacggtccctgtaagttcgcatgtttttggttttcgtccatgtaag 11669900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 28139454 - 28139513
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||   ||||||||||    
T  28139454 gggcattttggtcatttactttgggaatgggcaaatccatttgggtaaaaagcagaattc 28139513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 12178483 - 12178540
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| || |||||||||| | ||||||||||||||| ||||    
T  12178483 ggcttaaatatgtaaaaggtccctctaagttcgcgtgtttttggttttcgtccctgta 12178540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 33839471 - 33839520
Alignment:
Q  16 gtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||||||||    
T  33839471 gtcatttactttgagaatgagcgaatccatttggataaagagcagaattc 33839520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 10527015 - 10527062
Alignment:
Q  18 catttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||||||  |||||||||||||||  |||||||||||    
T  10527015 catttactttgggaatgattgaatccatttgggtaaagagcagaattc 10527062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 28138814 - 28138759
Alignment:
Q  10 atttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||||||||||||||||| ||  ||||||||||  |||||||||||    
T  28138814 attttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattc 28138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 28556240 - 28556293
Alignment:
Q  133 ctttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggtttt 186  Q
    |||||||||||||||| ||||||||| ||||||| || ||| | ||||||||||    
T  28556240 ctttttggcttaaatatgtaaaaggtatctgtaatttagcgtgtttttggtttt 28556293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 42548206 - 42548161
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||||| || | ||||||||| ||||||||||||    
T  42548206 tttactttgggaatgagcaaaacgatttgggtaatgagcagaattc 42548161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 26009424 - 26009368
Alignment:
Q  10 atttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattcg 66  Q
    |||| ||||||||||||||||||||||| ||  | ||||||||  ||||||||||||    
T  26009424 attttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattcg 26009368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 41593267 - 41593203
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    ||||||||||||||| ||||| |||| ||||||||||| |   |||||||||| |||| ||||||    
T  41593267 tttttggcttaaatatgtaaatggtccctgtaagttcgtgcatttttggttttggtccctgtaag 41593203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 35931417 - 35931348
Alignment:
Q  129 ttttctttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35931417 ttttttttttgacttaaataggtaaaaggtccctgtaagttcgcgagattttggttttcgtccttgtaag 35931348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 34016061 - 34016002
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  34016061 gggcatttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 759217 - 759160
Alignment:
Q  8 gcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  759217 gcatttcggtcatttactttgggaatgatcgaatccatttaggtaatgagcagaattc 759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 35929523 - 35929611
Alignment:
Q  140 gcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaagnnnnnnngttgcgagtcaacccctgtattt 228  Q
    ||||||||| ||||||||||  |||||||||| ||||||||||||||||||| ||||||       |||||||| ||||||||||||||    
T  35929523 gcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgtccctgtaagtttttttgttgcgagacaacccctgtattt 35929611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28677950 - 28677886
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||    
T  28677950 cgtaggggtatttcggtcatttactttaggaatgagcgattccatttggataatgagcagaattc 28677886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6706049 - 6706107
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagca 59  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||||| || ||||||    
T  6706049 cgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 40266607 - 40266653
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggta 52  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  40266607 gggcattttggtcatttactttgggaatgagcaaatccatttgggta 40266653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 17636392 - 17636344
Alignment:
Q  17 tcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  17636392 tcatttattttgggaatgagcgaatccatttaggtaatgagcagaattc 17636344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17644614 - 17644678
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||| || |||||||||||||||||||||||||||||| |||| |||||| |||||    
T  17644614 cgtaggggtattttggacatttactttgggaatgagcgaatccatttcggtaatgagcacaattc 17644678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 38624716 - 38624768
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  38624716 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 38624768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6158973 - 6159020
Alignment:
Q  18 catttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  6158973 catttactttgggaatgagcgaatccatttaagtaatgagcagaattc 6159020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 22252272 - 22252333
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattcgc 67  Q
    |||||||| |||||||||||||||||| |||| |||||||||||| |  ||||| |||||||    
T  22252272 gggcattttggtcatttactttgggaacgagcaaatccatttgggcaaagagcataattcgc 22252333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 30491828 - 30491869
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcaga 61  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  30491828 tttactttgggaatgagcgaattcatttgggtaatgagcaga 30491869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 38626229 - 38626172
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| ||||||||||||  | ||||||||||||||| ||||    
T  38626229 ggcttaaatatgtaaaaggtccctgtaagttcgcatgtttttggttttcgtccatgta 38626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 40266430 - 40266385
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggt 51  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||    
T  40266430 gggcattttggtcatttactttgggaatgaacaaatccatttgggt 40266385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 33037400 - 33037440
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatt 46  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  33037400 gggcattttggtcatttactttgggaatgagtgaatccatt 33037440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34017633 - 34017697
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||||||||||||||||||  |||||||| | ||||||| ||| ||||||||||||    
T  34017633 cgtaggggtatttcggtcatttactttgaaaatgagcggaaccatttgagtaatgagcagaattc 34017697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 1145891 - 1145954
Alignment:
Q  2 gtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||| | ||||||||||||||||||||||||    |||||||| || |||||||||    
T  1145891 gtaagggcattttgatcatttactttgggaatgagcgaaattgtttgggtaatgtgcagaattc 1145954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 1145199 - 1145141
Alignment:
Q  7 ggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||| |||||||||||||||||||||||||| |  ||||| || |||||| |||||    
T  1145199 ggcattttggtcatttactttgggaatgagcgaaactgtttggataatgagcataattc 1145141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 5506712 - 5506766
Alignment:
Q  8 gcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaa 62  Q
    |||||||| |||||||||||||||||||| ||||||| |||  || |||||||||    
T  5506712 gcatttcgatcatttactttgggaatgagtgaatccagttgaataatgagcagaa 5506766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33144198 - 33144236
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcga 39  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  33144198 cgtaggggcatttcggtcatttactttaggaatgagcga 33144236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 16308565 - 16308622
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||  ||| ||||||||||||| | ||||||||||||||| ||||    
T  16308565 ggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgta 16308622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8273309 - 8273245
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8273309 cgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8277402 - 8277452
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggt 51  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  8277402 cgtaagggcatttcggtcatttactttgggaatgagcggaaccatttgggt 8277452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 40304826 - 40304764
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||    
T  40304826 tttttggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgta 40304764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 28564015 - 28563955
Alignment:
Q  138 tggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||| |||| ||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  28564015 tggctttaataagtaaaaggtccttgtaagttcgcgagattttggttttcgtccctgtaag 28563955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 25389867 - 25389928
Alignment:
Q  4 aagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||| |||||||||||||| |||||||| |||||||||| |||  |||||||||||    
T  25389867 aagggcattttggtcatttactttgagaatgagcaaatccatttgagtaaagagcagaattc 25389928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 44097412 - 44097355
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||||||  ||||||||||||||||||||||| | ||||||||||||||| ||||    
T  44097412 ggcttaaatatataaaaggtctctgtaagttcgcgtgtttttggttttcgtccctgta 44097355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22787999 - 22788063
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||| ||||||||||||||||||||| | ||||||||||||||  |||||||||||    
T  22787999 cgtaggggtattttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattc 22788063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 40303293 - 40303345
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  40303293 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 40303345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 45499305 - 45499357
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  45499305 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 45499357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 7317392 - 7317447
Alignment:
Q  141 cttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||| ||||||| || ||||||||||||| | ||||||||||||||||||||    
T  7317392 cttaaatatgtaaaagatccctgtaagttcgcgtgtttttggttttcgtccttgta 7317447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 22054334 - 22054393
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  22054334 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 22054393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 37893027 - 37893086
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| || | ||||||||||||||||||||| ||||||||||| | ||||||||||    
T  37893027 gggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 6844156 - 6844099
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||    
T  6844156 ggcttaaatatgtaaaaggtccttgtaagttcgcgtgtttttggttttcatccttgta 6844099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 22060221 - 22060160
Alignment:
Q  137 ttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||||| ||||||||||  ||||||||||||   ||||||||||||||| ||||||    
T  22060221 ttggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggttttcgtccctgtaag 22060160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 42928937 - 42928994
Alignment:
Q  141 cttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||| ||||||||||||||||||||||||   ||||||||||||| | ||||||    
T  42928937 cttaaatatgtaaaaggtctctgtaagttcgcgcatttttggttttcgttcatgtaag 42928994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 45493091 - 45493034
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| |||||| |||||| | ||||||||||||||| ||||    
T  45493091 ggcttaaatatgtaaaaggtccctgtaaattcgcgtgtttttggttttcgtccctgta 45493034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 45500833 - 45500776
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| |||||| |||||| | ||||||||||||||| ||||    
T  45500833 ggcttaaatatgtaaaaggtccctgtaaattcgcgtgtttttggttttcgtccctgta 45500776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 22060538 - 22060487
Alignment:
Q  140 gcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    ||||||||| |||||||||| ||||||||| ||| | |||||||||||||||    
T  22060538 gcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtcc 22060487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 22053128 - 22053182
Alignment:
Q  142 ttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||| ||||||||||| |||||||||||| | |||| |||||||||| ||||    
T  22053128 ttaaatatgtaaaaggtctttgtaagttcgcgtgttttttgttttcgtccctgta 22053182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 38147103 - 38147137
Alignment:
Q  18 catttactttgggaatgagcgaatccatttgggta 52  Q
    |||||||||| ||||||||||||||||||||||||    
T  38147103 catttactttaggaatgagcgaatccatttgggta 38147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11713022 - 11712961
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaa 62  Q
    |||| |||||||| || | ||||||||||||||||||||| |||| | |||| |||||||||    
T  11713022 cgtaggggcattttggacttttactttgggaatgagcgaaaccatctaggtaatgagcagaa 11712961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 20685051 - 20685006
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||| ||||||||| | ||||||||||| ||||||||||||    
T  20685051 tttactttgagaatgagcggaaccatttgggtaatgagcagaattc 20685006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 24929366 - 24929411
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||| |||||| |||||| |||| ||||||||||||    
T  24929366 tttactttgggaatcagcgaaaccattttggtaatgagcagaattc 24929411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 40128996 - 40128927
Alignment:
Q  129 ttttctttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||| ||||||||||| ||| |||||||||| |||||| ||||||   |||| |||||||||| ||||||    
T  40128996 ttttttttttggcttacatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgtaag 40128927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 8803360 - 8803308
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||  |||| |||||||||||  |||||||||||||||||    
T  8803360 ggcttaaataagtaaatcgtctttgtaagttcgcatgattttggttttcgtcc 8803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18387305 - 18387241
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||  |  |||||||||||||||||||  | ||||||| ||| ||||||||||||    
T  18387305 cgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaattc 18387241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22727726 - 22727662
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||| ||||||||||||||||||| ||| |||| |||||||||  |||||| ||||    
T  22727726 cgtaggggtatttgggtcatttactttgggaataagcaaatctatttgggtaaagagcaggattc 22727662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5967251 - 5967315
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5967251 cgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 5967315  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 34279580 - 34279639
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||| ||||||||||| |||||||||||||||||||  ||| ||||||||||||    
T  34279580 gggcatttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaattc 34279639  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 9418637 - 9418587
Alignment:
Q  15 ggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  9418637 ggtcttttactttgggaatgagcgaaaccatttgggtaatgagcagaattc 9418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 45448554 - 45448497
Alignment:
Q  136 tttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcctt 193  Q
    ||||||||||||| |||||||||| || |||||||||| | |||||||||||||||||    
T  45448554 tttggcttaaatatgtaaaaggtccctctaagttcgcgtgtttttggttttcgtcctt 45448497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 357977 - 358036
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  357977 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 358036  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 31762296 - 31762241
Alignment:
Q  10 atttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||| | ||||||||||||||||||||||||||||||  || ||||||||||||    
T  31762296 atttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaattc 31762241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 21142480 - 21142537
Alignment:
Q  140 gcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaa 197  Q
    ||||||||| |||||||||| |||||||||||||   |||| ||||||||||||||||    
T  21142480 gcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccttgtaa 21142537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 33220820 - 33220865
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  33220820 tttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 7272900 - 7272989
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaagnnnnnnngttgcgagtcaacccctgtattt 228  Q
    |||||||||| |||||||||||||||||||| |||   |||||||||| |||| ||||||       |||||||| ||| ||||||||||    
T  7272900 ggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagtccctgtaagtttttttgttgcgagacaaaccctgtattt 7272989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 43641003 - 43641051
Alignment:
Q  17 tcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  43641003 tcatttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 3588564 - 3588623
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| ||||||||| ||||||||||||| ||| ||||||||||  ||| |||||||    
T  3588564 gggcattttggtcatttaatttgggaatgagcaaattcatttgggtaaagagtagaattc 3588623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 17706165 - 17706224
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||| || ||| | |||||||||| |||||||||||    
T  17706165 ggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccttgtaag 17706224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 3158096 - 3158039
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||  ||| ||||||||||||| | ||||||||||||||| ||||    
T  3158096 ggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgta 3158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 39884616 - 39884673
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| ||||| |||| ||||||||||||| | |||||||||| |||| ||||    
T  39884616 ggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgta 39884673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 39886135 - 39886078
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| ||||| |||| ||||||||||||| | |||||||||| |||| ||||    
T  39886135 ggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgta 39886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 359373 - 359321
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| |||||||||||||   |||| ||||||||||    
T  359373 ggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtcc 359321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37687326 - 37687390
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||  |||| || |||||||||||| |||||||| | ||||||||||| | ||||||||||    
T  37687326 cgtaaggatattttggacatttactttggaaatgagcggaaccatttgggtaataagcagaattc 37687390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15040745 - 15040681
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15040745 cgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 15040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53814575 - 53814639
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  53814575 cgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 53814639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 7665795 - 7665739
Alignment:
Q  3 taagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagca 59  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  7665795 taagggcatttcggtcatttactttgcgaatgagcgaatccatttgggaaatgagca 7665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 48568593 - 48568537
Alignment:
Q  135 ttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  48568593 ttttggcttaaatatgtaaaaggtctctgtaagttcgcgtgtttttggttttcgtcc 48568537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 31796898 - 31796841
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    ||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  31796898 tttttggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 31796841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 41081802 - 41081859
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||    
T  41081802 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgta 41081859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6162696 - 6162760
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| || | ||||||||||||||||||| | ||||||||||| ||||||||||||    
T  6162696 cgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaatt 64  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 40499311 - 40499259
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| ||||||||||||| | |||||||||||||||    
T  40499311 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 40499259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 31795371 - 31795422
Alignment:
Q  137 ttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcg 188  Q
    |||||||||||| |||||||||| ||||||||||||| | ||||||||||||    
T  31795371 ttggcttaaatacgtaaaaggtccctgtaagttcgcgtgtttttggttttcg 31795422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 33781550 - 33781495
Alignment:
Q  142 ttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaa 197  Q
    ||||||| |||||||||| ||||||||||||| | |||| ||||||||||||||||    
T  33781550 ttaaatatgtaaaaggtccctgtaagttcgcgcgttttttgttttcgtccttgtaa 33781495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 53824349 - 53824291
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||| | ||||||||||    
T  53824349 gggcatttcagtcatttactttgggaatgagc-attccatttgggtaataagcagaattc 53824291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 32558919 - 32558977
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaa 197  Q
    |||||||||| |||||||||| ||||||||||||| | |||| |||||||||| |||||    
T  32558919 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttttcgtccctgtaa 32558977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 4969920 - 4969875
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||    
T  4969920 tttactttgggaatgagcggaaccatttgggtaatgagcagaattc 4969875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 35069467 - 35069524
Alignment:
Q  8 gcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||||||| | ||||| ||||||||||| | || ||||||||||||    
T  35069467 gcatttcggtcatttactttagaaatgaacgaatccatttagataatgagcagaattc 35069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 41083335 - 41083278
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||| |||||||||| |||||||||| ||||||||| ||| | |||||||||||||||    
T  41083335 ttttaggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtcc 41083278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 50663939 - 50663875
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| ||| ||||||||||||||||||||||  |||||||||   |||||||||||    
T  50663939 cgtaggggcattttggttatttactttgggaatgagcgaaatcatttgggtgaagagcagaattc 50663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53827675 - 53827739
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| || ||||||||||||||||||||||  | |||| |||| ||||||||||||    
T  53827675 cgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcagaattc 53827739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 48566996 - 48567047
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtc 190  Q
    |||||||||| |||||||||| ||||||||| ||| | ||||||||||||||    
T  48566996 ggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggttttcgtc 48567047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 24612279 - 24612329
Alignment:
Q  140 gcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtc 190  Q
    ||||||||| |||||||||| |||||||||||||   ||||||||||||||    
T  24612279 gcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtc 24612329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 30700299 - 30700353
Alignment:
Q  142 ttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||| |||||  |||||| |||||||||| | ||||||||||||||||||||    
T  30700299 ttaaatatgtaaatcgtctctttaagttcgcgtgtttttggttttcgtccttgta 30700353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 32559942 - 32559908
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcg 173  Q
    |||||||||| ||||||||||||||||||||||||    
T  32559942 ggcttaaatatgtaaaaggtctctgtaagttcgcg 32559908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 40517551 - 40517601
Alignment:
Q  15 ggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||| |||||||||||| || ||||||||  |||||||||||    
T  40517551 ggtcatttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 24613669 - 24613612
Alignment:
Q  141 cttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||| |||||||||| |||||||||||||   |||| |||||||||| ||||||    
T  24613669 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgtaag 24613612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 30533267 - 30533234
Alignment:
Q  18 catttactttgggaatgagcgaatccatttgggt 51  Q
    ||||||||||||||||||||||| ||||||||||    
T  30533267 catttactttgggaatgagcgaaaccatttgggt 30533234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 44430463 - 44430418
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||||| || |||||||| || ||||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaattc 44430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 39645830 - 39645774
Alignment:
Q  9 catttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||| |||||||||||| |||||| ||||||||||| | || ||||| ||||||    
T  39645830 catttcgatcatttactttgcgaatgaacgaatccatttagataatgagcggaattc 39645774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 17436563 - 17436619
Alignment:
Q  9 catttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  17436563 catttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattc 17436619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31522549 - 31522613
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||    
T  31522549 cgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaattc 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32274248 - 32274183
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattcg 66  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  32274248 cgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggcaatgagcataattcg 32274183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14153418 - 14153354
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||| |||| ||||||||||||||||||||||| ||  |||||||||| ||||||||||||    
T  14153418 cgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 32275790 - 32275849
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||| ||||||||||||||||||||||| | |||||||| || |||||| |||||    
T  32275790 gggcatttcagtcatttactttgggaatgagcggaaccatttggataatgagcataattc 32275849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 24326993 - 24326944
Alignment:
Q  16 gtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||||||||||    
T  24326993 gtcatttattttgggaatgagcgaattcatttgagtaatgagcagaattc 24326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 842181 - 842245
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    ||||||||||||||| ||| |||||| |||||||||||||   |||| |||||||||| ||||||    
T  842181 tttttggcttaaatatgtataaggtccctgtaagttcgcgcattttttgttttcgtccctgtaag 842245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 30321220 - 30321164
Alignment:
Q  142 ttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    ||||||| |||||||||||||||||||||| |   ||||||||||||||| ||||||    
T  30321220 ttaaatatgtaaaaggtctctgtaagttcgtgcatttttggttttcgtccctgtaag 30321164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35060909 - 35060973
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| || |||||||||||| |||||||| |  |||||||||| ||||||||||||    
T  35060909 cgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattc 35060973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 11065713 - 11065654
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| ||||||||||  ||||||||||||   ||||||||||||||| ||||||    
T  11065713 ggcttaaatatgtaaaaggtccttgtaagttcgcgcatttttggttttcgtccctgtaag 11065654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 1443417 - 1443474
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| || ||||||| |||||||||| || | ||||||||||||||| ||||    
T  1443417 ggcttaaatatgtgaaaggtccctgtaagttcacgtgtttttggttttcgtccctgta 1443474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 7800298 - 7800237
Alignment:
Q  137 ttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||||| ||||||| | | ||||||||||||  ||||| |||||||||| ||||||    
T  7800298 ttggcttaaatatgtaaaagatttatgtaagttcgcgcaatttttgttttcgtccctgtaag 7800237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24974160 - 24974221
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaa 62  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  24974160 cgtaggggcatttcggtcatttactttgggaatgagcaaatccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36501879 - 36501940
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaa 62  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  36501879 cgtaggggcatttcgatcatttactttgggaatgagcgaatccatctgggtaatgagcagaa 36501940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 33607471 - 33607525
Alignment:
Q  142 ttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||    
T  33607471 ttaaatatgtaaaaggtctctgtaagttcgcgtgtttttggttttcgtccttgta 33607525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 33609408 - 33609346
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    ||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||    
T  33609408 ttttttgcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccttgta 33609346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 4907529 - 4907468
Alignment:
Q  130 tttctttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    ||||||||||||||||||| |||||||||| |||||||||||||   |||||||||||||||    
T  4907529 tttctttttggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtcc 4907468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34235718 - 34235782
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||||||||||||||||| |||||||||| | ||||||||||| |||||| |||||    
T  34235718 cgtatgggcatttcggtcatttactttaggaatgagcggaaccatttgggtaatgagcataattc 34235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 27992174 - 27992132
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttg 48  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  27992174 gggcatttcggtcatttactttgggaatgagcaaatccatttg 27992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 35786737 - 35786680
Alignment:
Q  141 cttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||| |||||||||| |||||||||||||   ||||||||||||||||||||||    
T  35786737 cttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccttgtaag 35786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51719788 - 51719853
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattcg 66  Q
    |||| ||| |||||||| ||||||||||| ||| |||||||||||||||||| | |||||||||||    
T  51719788 cgtaggggtatttcggttatttactttggaaataagcgaatccatttgggtaataagcagaattcg 51719853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33164519 - 33164583
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||||||| || ||||||||||| ||||||||| | ||||||||||| ||||||||||||    
T  33164519 cgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 55527927 - 55527991
Alignment:
Q  1 cgtaagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||   || ||||||||||||    
T  55527927 cgtaggggcatttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaattc 55527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 4906129 - 4906188
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  4906129 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 4906188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 4931998 - 4932057
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  4931998 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 4932057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 628133 - 628088
Alignment:
Q  20 tttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||||    
T  628133 tttactttaggaatgagcgaaaccatttgggtaatgagcagaattc 628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 4933390 - 4933338
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| |||||||||||||   |||||||||||||||    
T  4933390 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtcc 4933338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 12586820 - 12586875
Alignment:
Q  9 catttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||    
T  12586820 catttcggtcattta-tttggaaatgagcgaatccatttgagtaatgagctgaattc 12586875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 29756272 - 29756324
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| |||||||||| |||||||||||||   |||||||||||||||    
T  29756272 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtcc 29756324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 29757667 - 29757608
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||| ||   ||||||||||||||| ||||||    
T  29757667 ggcttaaatatgtaaaaggtccctgtaagttcacgcatttttggttttcgtccctgtaag 29757608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 45237470 - 45237411
Alignment:
Q  6 gggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||| || ||||||||| | ||| |||||||||||||| ||| ||||||||||||    
T  45237470 gggcatttcagttatttactttagaaataagcgaatccatttgagtaatgagcagaattc 45237411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 22674154 - 22674211
Alignment:
Q  141 cttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||| |||||||||| || ||||||||||   |||| |||||||||||||||||    
T  22674154 cttaaatatgtaaaaggtccctataagttcgcgcattttttgttttcgtccttgtaag 22674211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 23703927 - 23703863
Alignment:
Q  134 tttttggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||| |||||||||| |||||||||| || ||||||||||   ||||||||||| ||| ||||||    
T  23703927 ttttaggcttaaatatgtaaaaggtccctctaagttcgcgcatttttggttttcatccctgtaag 23703863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 40923922 - 40923966
Alignment:
Q  15 ggtcatttactttgggaatgagcgaatccatttgggtagtgagca 59  Q
    |||| |||||||| |||||||||||| ||||||||||| ||||||    
T  40923922 ggtcttttactttaggaatgagcgaaaccatttgggtaatgagca 40923966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 4316 - 4257
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgtaag 198  Q
    |||||||||| |||||||||| |||||||||||||   ||||||||||||||| ||||||    
T  4316 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgtaag 4257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 380 - 442
Alignment:
Q  3 taagggcatttcggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    ||||||||||| ||   ||||||||||||||||||||| |||||||||||  ||||| |||||    
T  380 taagggcatttgggatttttactttgggaatgagcgaaaccatttgggtaaagagcataattc 442  T

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Target: scaffold0246 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 2881 - 2931
Alignment:
Q  15 ggtcatttactttgggaatgagcgaatccatttgggtagtgagcagaattc 65  Q
    |||| |||| |||| ||||||||||| ||||||||||| ||||||||||||    
T  2881 ggtcttttattttgagaatgagcgaaaccatttgggtaatgagcagaattc 2931  T

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Target: scaffold1118 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 2423 - 2464
Alignment:
Q  150 gtaaaaggtctctgtaagttcgcgagattttggttttcgtcc 191  Q
    |||||||||| ||||||||||||| | |||||||||||||||    
T  2423 gtaaaaggtccctgtaagttcgcgtgtttttggttttcgtcc 2464  T

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Target: scaffold0280 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 12131 - 12188
Alignment:
Q  139 ggcttaaataggtaaaaggtctctgtaagttcgcgagattttggttttcgtccttgta 196  Q
    |||||||||| |||||||||  | ||||||||||| | ||||||||||||||| ||||    
T  12131 ggcttaaatatgtaaaaggttccggtaagttcgcgtgtttttggttttcgtccctgta 12188  T

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