View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_high_25 (Length: 215)

Name: NF3300_high_25
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_high_25
NF3300_high_25
[»] chr8 (3 HSPs)
chr8 (1-215)||(10043172-10043388)
chr8 (1-49)||(32256385-32256433)
chr8 (1-49)||(9270422-9270468)
[»] chr3 (3 HSPs)
chr3 (1-49)||(40797435-40797483)
chr3 (1-49)||(42106540-42106588)
chr3 (11-49)||(912982-913020)
[»] chr4 (2 HSPs)
chr4 (1-49)||(40861340-40861388)
chr4 (1-49)||(53648030-53648076)
[»] chr7 (4 HSPs)
chr7 (1-49)||(41748191-41748239)
chr7 (3-49)||(43483992-43484038)
chr7 (1-34)||(2532343-2532376)
chr7 (1-49)||(47750136-47750182)
[»] chr2 (2 HSPs)
chr2 (1-49)||(10589497-10589545)
chr2 (1-49)||(15673634-15673681)
[»] scaffold0011 (1 HSPs)
scaffold0011 (3-49)||(11415-11463)
[»] chr5 (2 HSPs)
chr5 (1-49)||(2555002-2555048)
chr5 (1-49)||(29310020-29310066)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 10043172 - 10043388
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttatttnnnnnnnnnnnnnnt--gtttcaggcagtccgtattcattgaaacttctta 98  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||                 |||| |||||||||||||||||||||||||||||    
T  10043172 tcgatgtactctatcaatttgaatttgaatgaatgaatatcatttatttaaaaaaaaaaaaaaaaagttttaggcagtccgtattcattgaaacttctta 10043271  T
Q  99 atattgatataaatcaaatgtcacgaatgcgataattcaatatctctaaaacgattaccgtccaaacagttatcctaaatcgaggattgaaagcaagcaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10043272 atattgatataaatcaaatgtcacgaatgcgataattcaatatctctaaaacgattaccgtccaaacagttatcctaaatcgaggattgaaagcaagcaa 10043371  T
Q  199 tttatactaaatttaaa 215  Q
    |||||||||||||||||    
T  10043372 tttatactaaatttaaa 10043388  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32256433 - 32256385
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32256433 tcgatgtactctgtcaatttgaatttgaatgaatgaatatcatttattt 32256385  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9270422 - 9270468
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||  ||||||||| |||||| |||||||    
T  9270422 tcgatgtactctatcaatttgaa--tgaatgaatgaatatcttttattt 9270468  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40797435 - 40797483
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40797435 tcgatgtactctatcaatttgaatttgaatgaatgaatatcatttattt 40797483  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42106540 - 42106588
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42106540 tcgatgtactctatcaatttgaatttgaatgaatgaatatcatttattt 42106588  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 913020 - 912982
Alignment:
Q  11 ctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  913020 ctatcaatttgaatttgaatgaatgaataacatttattt 912982  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40861340 - 40861388
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  40861340 tcgatgtactctatcaatttgaatttgaatgaatgaatataatttattt 40861388  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53648030 - 53648076
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  53648030 tcgatgtactctatcaatttgaa--tgaatgaatatatatcgtttattt 53648076  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41748239 - 41748191
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  41748239 tcgatgtactatatcaatttgaatttgaaagaatgaatatcatttattt 41748191  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 43483992 - 43484038
Alignment:
Q  3 gatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||| ||| ||||||||||| |||||||||||||||||||| |||||    
T  43483992 gatgaactatatcaatttgattttgaatgaataaatatcatctattt 43484038  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2532343 - 2532376
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaat 34  Q
    |||||||||||||||||||||||||| |||||||    
T  2532343 tcgatgtactctatcaatttgaatttaaatgaat 2532376  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47750136 - 47750182
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||  ||||||||| |||||| |||||||    
T  47750136 tcgatgtactctatcaatttgaa--tgaatgaatgaatatcttttattt 47750182  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10589497 - 10589545
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    ||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  10589497 tcgatatactctatcaatttaaatttgaatgaatcaatataatttattt 10589545  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15673681 - 15673634
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  15673681 tcgatgtactctatcaattt-aatttgaatgaatgaatatcttttattt 15673634  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11415 - 11463
Alignment:
Q  3 gatgtactctatcaatttga--atttgaatgaataaatatcatttattt 49  Q
    ||||||||||||||||||||  |||||||||||| |||||| |||||||    
T  11415 gatgtactctatcaatttgagaatttgaatgaatgaatatcttttattt 11463  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2555048 - 2555002
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||  ||||||||| |||||||| |||||    
T  2555048 tcgatgtactctatcaatttgaa--tgaatgaatgaatatcatctattt 2555002  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29310066 - 29310020
Alignment:
Q  1 tcgatgtactctatcaatttgaatttgaatgaataaatatcatttattt 49  Q
    |||||||||||||||||||||||  ||||||||| |||||| |||||||    
T  29310066 tcgatgtactctatcaatttgaa--tgaatgaatgaatatcttttattt 29310020  T

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