View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_high_4 (Length: 426)
Name: NF3300_high_4
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 21180626 - 21181019
Alignment:
| Q |
14 |
gagatgaaccggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgct |
113 |
Q |
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| T |
21180626 |
gagatgaaccggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgct |
21180725 |
T |
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| Q |
114 |
caacagttgcccattgcttgaaaaactcacattggacataagttcacagcttatatttgaggtcagtcaaatacttttacatttttctctctcaatataa |
213 |
Q |
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| T |
21180726 |
caacagttgcccattgcttgaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatacttt-acatttctctctctcaatac-- |
21180822 |
T |
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| Q |
214 |
tttaacattgtaatcattgatatggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagacctta |
313 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21180823 |
-ttaacattgtaatcattgatatggtttgatttttaatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagacctta |
21180921 |
T |
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| Q |
314 |
agaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaactt |
411 |
Q |
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| T |
21180922 |
agaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaaaatagtttgaaggtggtagaagtaattggattgagagccacaaacgaagaactt |
21181019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 40994297 - 40994137
Alignment:
| Q |
30 |
gatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattg |
129 |
Q |
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| T |
40994297 |
gatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattg |
40994198 |
T |
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| Q |
130 |
cttgaaaaactcacattggacataagttcacagcttatatttgaggtcagtcaaatacttt |
190 |
Q |
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| T |
40994197 |
cttgaaaaacttacattggacataagtccacaagttatatttgaggtgagtaaaatacttt |
40994137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 233 - 411
Target Start/End: Complemental strand, 40994072 - 40993894
Alignment:
| Q |
233 |
atatggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttggcaaactcg |
332 |
Q |
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| T |
40994072 |
atatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagagaccttgcgagattttggcaaacgcg |
40993973 |
T |
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| Q |
333 |
tcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaactt |
411 |
Q |
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| T |
40993972 |
tcgagtgtttcctcaatgcttgcaaaatactttgaaggtggtagaagtaattggattgagagccacaaacgaagaactt |
40993894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 252 - 411
Target Start/End: Complemental strand, 40989669 - 40989506
Alignment:
| Q |
252 |
acttttgaatgattggttgtatatattacaggac----tatacacttccctatcaagtagaccttaagaaattttggcaaactcgtcgagtgtttcctga |
347 |
Q |
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| T |
40989669 |
acttttgaatgtttgctcgtatatattagaggaccatatatacacttccatatcatgttgaccttaagaaattttggcaaactcgtcgagtgttttctca |
40989570 |
T |
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| Q |
348 |
atgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaactt |
411 |
Q |
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| T |
40989569 |
atgcttgcaaaatactttgaaggtggtagaagtaataggattgagagccacagacgaataactt |
40989506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 40986521 - 40986366
Alignment:
| Q |
42 |
tttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattgcttgaaaaactc |
141 |
Q |
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| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
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| Q |
142 |
acattggacataagttcacagcttatatttgaggtcagtcaaatacttttacattt |
197 |
Q |
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| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacattt |
40986366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 411
Target Start/End: Complemental strand, 40986309 - 40986134
Alignment:
| Q |
236 |
tggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttggcaaactcgtcg |
335 |
Q |
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||||||||||||| | ||||||||||| || | ||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
40986309 |
tggtttgatttttaacacttttgaatgttttctcgtatacattacaggactatagacttccctatcttacagaccttgagaaattttggcaaacgcgtcg |
40986210 |
T |
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| Q |
336 |
agtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaactt |
411 |
Q |
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||||||| || |||||||| || ||| ||||||| || ||||| || |||||| ||||| ||||||| |||||||| |
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| T |
40986209 |
agtgtttgctcaatgcttgcaaaatactttgaagatgatagaaatatttggatcgagagccacaaaccaagaactt |
40986134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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