View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_high_7 (Length: 411)

Name: NF3300_high_7
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_high_7
NF3300_high_7
[»] chr7 (12 HSPs)
chr7 (12-395)||(6333885-6334271)
chr7 (14-395)||(6326396-6326791)
chr7 (38-120)||(6242322-6242406)
chr7 (149-202)||(6220817-6220869)
chr7 (309-358)||(42720892-42720941)
chr7 (140-204)||(6331386-6331449)
chr7 (309-365)||(38143231-38143287)
chr7 (302-357)||(3520345-3520400)
chr7 (140-168)||(6347385-6347413)
chr7 (302-358)||(16341497-16341553)
chr7 (290-358)||(20549780-20549848)
chr7 (302-358)||(44020976-44021032)
[»] scaffold2079 (1 HSPs)
scaffold2079 (12-98)||(528-615)
[»] scaffold0022 (1 HSPs)
scaffold0022 (290-365)||(90832-90907)
[»] chr6 (15 HSPs)
chr6 (292-358)||(33001291-33001357)
chr6 (310-355)||(26314639-26314684)
chr6 (293-355)||(30866149-30866211)
chr6 (290-358)||(426516-426584)
chr6 (290-358)||(7265595-7265663)
chr6 (290-358)||(7938105-7938173)
chr6 (290-358)||(32299264-32299332)
chr6 (308-358)||(11784218-11784268)
chr6 (309-358)||(7151420-7151469)
chr6 (309-358)||(9617442-9617491)
chr6 (309-358)||(24138434-24138483)
chr6 (309-366)||(33419181-33419238)
chr6 (309-345)||(4118348-4118384)
chr6 (310-358)||(9629392-9629440)
chr6 (288-332)||(21424830-21424874)
[»] chr3 (8 HSPs)
chr3 (298-358)||(4201393-4201453)
chr3 (290-358)||(39002021-39002089)
chr3 (296-358)||(7928445-7928507)
chr3 (292-358)||(8039837-8039903)
chr3 (292-358)||(10455781-10455847)
chr3 (296-354)||(25326421-25326479)
chr3 (309-354)||(29508452-29508497)
chr3 (290-358)||(17005621-17005689)
[»] chr8 (5 HSPs)
chr8 (309-364)||(12606825-12606880)
chr8 (308-358)||(12985399-12985449)
chr8 (309-358)||(14134707-14134756)
chr8 (290-343)||(29519184-29519237)
chr8 (309-357)||(31236580-31236628)
[»] chr2 (4 HSPs)
chr2 (290-356)||(30527599-30527665)
chr2 (309-358)||(34691807-34691856)
chr2 (309-358)||(34714219-34714268)
chr2 (290-358)||(18420436-18420504)
[»] chr5 (8 HSPs)
chr5 (309-358)||(23012410-23012459)
chr5 (309-364)||(12927662-12927717)
chr5 (290-332)||(7997194-7997236)
chr5 (309-358)||(22423814-22423863)
chr5 (309-345)||(15405070-15405106)
chr5 (290-358)||(17123037-17123105)
chr5 (302-358)||(32630737-32630793)
chr5 (302-358)||(38749565-38749621)
[»] chr4 (7 HSPs)
chr4 (309-358)||(21720509-21720558)
chr4 (307-351)||(18491888-18491932)
chr4 (309-353)||(44081584-44081628)
chr4 (296-358)||(29205439-29205501)
chr4 (309-358)||(5775360-5775409)
chr4 (308-365)||(21345528-21345585)
chr4 (309-366)||(33950144-33950201)
[»] chr1 (7 HSPs)
chr1 (309-358)||(16927187-16927236)
chr1 (290-358)||(6427339-6427407)
chr1 (290-345)||(5927355-5927410)
chr1 (307-356)||(5454127-5454176)
chr1 (309-353)||(16164322-16164366)
chr1 (294-358)||(38503313-38503377)
chr1 (290-358)||(46348385-46348453)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 6333885 - 6334271
Alignment:
12 atgaagaaaaaacatggaaaaagaggtatgacacaatttggatgagaaagtggcccatttaaacgtttaatacgaatcgttttatacgatagtattcgat 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
6333885 atgaagaaaaaacagggaaaaagaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaatcgttttatacgatagtattcgat 6333984  T
112 tgaactttcattcgnnnnnnnnat--actcaatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcatttctaat 209  Q
    | ||||||||||||         |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6333985 tcaactttcattcgtttttttttttgactcaatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcatttctaat 6334084  T
210 aattcaacgaccaatatatggagaagaatgatgagcaactgatgaaaatccatgaagcaagcacatatacatttatgaaaactgacacaccaacacggat 309  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
6334085 aattcaacgaccagtatatggagaagaatgattagcaactgatgaaaatctatgaagcaagcacatatacatttatgaaaactgacacaccaacaaggat 6334184  T
310 aataatttg-aaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacctgtacgtgtccgataaggaaagatgtcta 395  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||    
6334185 aataatttgaaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacctatacgtgtccgacaagggaacatgtcta 6334271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 6326396 - 6326791
Alignment:
14 gaagaaaaaacatggaaaaagaggtatgacacaatttggat-----gagaaagtggcccatttaaacgtttaatacgaatcgttttatacgatagtattc 108  Q
    |||||||| |||||||||||||||  ||||||| ||||||      | ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
6326396 gaagaaaagacatggaaaaagaggcttgacacactttggaaagatagtgaaagtgacccatt-aaacgtttaatacgaatcgttttatacgatagtattc 6326494  T
109 gattgaactttcattcgnnnnnnnnat--------actcaatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctc 200  Q
    |||||||||||||||||         |        ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||    
6326495 gattgaactttcattcgttttttttttttttttggactcaatattggtctttaatattttaaatgttt-gacattttttcaacctgtggatcttaggctc 6326593  T
201 at-----ttc--taataattcaacgaccaatatatggagaagaatgatgagcaactgatgaaaatccatgaagcaagcacatatacatttatgaaaactg 293  Q
    ||     |||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    || ||||||||| ||||||||    
6326594 atgacatttcattaataattcaacgaccaatatatggagaagaatgatgagcaactaatgaaaatctatgaagca----caaatacatttacgaaaactg 6326689  T
294 acacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacctgtacgtgtccgataaggaaagatgtc 393  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||    
6326690 acacaccaaccctgataataatttaaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacctatacgtgtccgacaagggaacatgtc 6326789  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 6242406 - 6242322
Alignment:
38 tatgacacaatttggatgagaaagtggcccatt-taaacgtttaatacgaa-tcgttttatacgatagtattcgattgaactttc 120  Q
    ||||| ||||||||||||||| |||| ||||||  |||||||||||||||| ||||||||||| |||||  ||||||||| ||||    
6242406 tatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttc 6242322  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 6220869 - 6220817
Alignment:
149 ctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcat 202  Q
    |||||||||||||||||||| |||||||||||||| |||| |||| ||||||||    
6220869 ctttaatattttaaatgttt-gacattttttcaacttgtggatctcaggctcat 6220817  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 42720941 - 42720892
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||| ||||    
42720941 taataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgt 42720892  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 6331386 - 6331449
Alignment:
140 aatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcattt 204  Q
    ||||||||||||||||||||||||   ||||||| ||||||||| ||||||| ||||||| ||||    
6331386 aatattggtctttaatattttaaaatgtttgaca-tttttcaacttgtgaatttgaggctgattt 6331449  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 38143231 - 38143287
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacac 365  Q
    ||||||||||||||||||| |||| | ||||||||||||| ||| ||||| ||||||    
38143231 taataatttgaaaaaatcacataatttaatgtaattatatgtgttggtgtcagacac 38143287  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 3520400 - 3520345
Alignment:
302 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtg 357  Q
    |||| |||||| |||||| |||||||||||| | ||||||||||||| ||||||||    
3520400 acaccgataatcatttgagaaaatcatataattcaatgtaattatatgtgtcggtg 3520345  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 6347385 - 6347413
Alignment:
140 aatattggtctttaatattttaaatgttt 168  Q
    |||||||||||||||||||||||||||||    
6347385 aatattggtctttaatattttaaatgttt 6347413  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 16341497 - 16341553
Alignment:
302 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||| ||||||||||||| ||||||| |||| ||| ||||||||||| || ||||||    
16341497 acactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgt 16341553  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 20549780 - 20549848
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| |||| | ||||||||||| |||||||  ||| | | ||||||||||| |||||||||    
20549780 actgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgt 20549848  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 44020976 - 44021032
Alignment:
302 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||||||||||||||| | |||| | |||||||  |||| |||||||||    
44020976 acacggataataatttgaaaaaattacataattcaatgtaaccatatctgtcggtgt 44021032  T

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Target: scaffold2079 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 615 - 528
Alignment:
12 atgaagaaaaaacatggaaaaagaggtatgacacaatttggatgagaaagtggcccatttaaacgtttaatacgaa-tcgttttatac 98  Q
    ||||||||||||||||||||| ||| ||||| |||||||| |||||| |||| |||||  |||||||||||||||| |||||||||||    
615 atgaagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatac 528  T

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Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 90832 - 90907
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacac 365  Q
    ||||||||||||||||   ||||||||||| |||||||||||| | | ||||||||||||||||| ||| ||||||    
90832 actgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacac 90907  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 33001357 - 33001291
Alignment:
292 tgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||| || |||| | ||||||||||||||||||| |||| ||||||||||||||| |||||||||    
33001357 tgacacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgt 33001291  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 26314684 - 26314639
Alignment:
310 aataatttgaaaaaatcatataaataaatgtaattatatatgtcgg 355  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
26314684 aataatttgaaaaaatcatataattcaatgtaattatatatgtcgg 26314639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 30866211 - 30866149
Alignment:
293 gacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcgg 355  Q
    ||||||||||||| | ||||||||||| ||||||| |||| | ||||||||||||| ||||||    
30866211 gacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 426584 - 426516
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| || |||| | ||||||||||||||||||| |||| |||||||||||| |  |||||||||    
426584 actgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgt 426516  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 7265663 - 7265595
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| ||||||| | ||||||||||| ||||||| |||| | | ||||||||||| |||||||||    
7265663 actgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 7938105 - 7938173
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| || |||| | |||||||||||||||||||||||| | | ||||||||||  |||||||||    
7938105 actgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgt 7938173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 32299264 - 32299332
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||||| | ||||||||||||| ||||||| |||| | |||||| |||||  |||||||||    
32299264 actgacacaccaaccctgataataatttgagaaaatcacataattcaatgtagttatacgtgtcggtgt 32299332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 11784268 - 11784218
Alignment:
308 ataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||| ||||||| || ||| | |||||||||||||||||||||    
11784268 ataataatttgagaaaatcacatgaatcagtgtaattatatatgtcggtgt 11784218  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 7151420 - 7151469
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||||||||||| |||| ||| ||||||||||| ||| |||||    
7151420 taataatttgaaaaaatcacataattaagtgtaattatatgtgttggtgt 7151469  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 9617442 - 9617491
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| ||||||| |||| | ||||||||||||| |||||||||    
9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 24138434 - 24138483
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||||||||||||||| ||| |||| |||||| | |||||||    
24138434 taataatttgaaaaaatcatataattaagtgtatttatatgtatcggtgt 24138483  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 33419181 - 33419238
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacc 366  Q
    ||||||||||||||| | |||||| | ||||||||||||| ||| ||||| |||||||    
33419181 taataatttgaaaaattgatataattcaatgtaattatatgtgttggtgtcagacacc 33419238  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 4118384 - 4118348
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaatta 345  Q
    ||||||||||||||||||| |||| ||||||||||||    
4118384 taataatttgaaaaaatcacataattaaatgtaatta 4118348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 9629392 - 9629440
Alignment:
310 aataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||| ||||||| |||| | ||||||||||||| |||||||||    
9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 21424874 - 21424830
Alignment:
288 aaactgacacaccaacacggataataatttgaaaaaatcatataa 332  Q
    |||||||||| ||||||| | ||||||||||||||||||| ||||    
21424874 aaactgacacgccaacaccgctaataatttgaaaaaatcacataa 21424830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 4201393 - 4201453
Alignment:
298 accaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| | ||||||||||||||||||| |||| ||| ||||||||||||||| |||||    
4201393 accaacaccgttaataatttgaaaaaatcacataattaagtgtaattatatatgttggtgt 4201453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 39002021 - 39002089
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| ||| |||||  ||||||||||||||| |||| | |||||||||||||||||| ||||    
39002021 actgacacaccgacatggataggaatttgaaaaaatcacataattcaatgtaattatatatgtcagtgt 39002089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 7928445 - 7928507
Alignment:
296 acaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||| |||| | ||||||||||||||||||| |||| | | ||||||||||| |||||||||    
7928445 acaccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgt 7928507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 8039903 - 8039837
Alignment:
292 tgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||| ||||||| | ||||||||||| ||||| |||||| | | ||||||||||| |||||||||    
8039903 tgacacgccaacaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgt 8039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 10455781 - 10455847
Alignment:
292 tgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||| ||||||| | ||||||| ||| |||||||||||| ||| ||||||||||| ||| |||||    
10455781 tgacacgccaacactgctaataatatgagaaaatcatataactaagtgtaattatatgtgttggtgt 10455847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 25326421 - 25326479
Alignment:
296 acaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcg 354  Q
    |||||||||| ||||||||||| ||||||| |||||| | | |||||||||| ||||||    
25326421 acaccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcg 25326479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 29508452 - 29508497
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcg 354  Q
    |||||||||||||||||||||||| | | ||||||||||| |||||    
29508452 taataatttgaaaaaatcatataattcagtgtaattatatgtgtcg 29508497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 17005689 - 17005621
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||| |||||||||   ||||||||||| |||||||||||| | | ||||||||||  |||||||||    
17005689 actgactcaccaacaccactaataatttgataaaatcatataattcagtgtaattataagtgtcggtgt 17005621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 12606880 - 12606825
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagaca 364  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||||||||| |||||    
12606880 taataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 12985399 - 12985449
Alignment:
308 ataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||| ||||||| |||| | |||||||| ||||||||||||||    
12985399 ataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 14134707 - 14134756
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| ||||||| |||| | | |||||||||||||||||||||    
14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcggtgt 14134756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 29519184 - 29519237
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaat 343  Q
    ||||||||  |||||| ||||||||||| |||||||||||||| | ||||||||    
29519184 actgacacgtcaacaccgataataattttaaaaaatcatataattcaatgtaat 29519237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtg 357  Q
    ||||||||||| ||||||| |||| | ||||||||||||| ||||||||    
31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 30527665 - 30527599
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggt 356  Q
    ||||||||||| |||| | ||||||||||| |||||||||||| | | ||||||||||| |||||||    
30527665 actgacacacccacactgttaataatttgagaaaatcatataatttagtgtaattatatgtgtcggt 30527599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 34691856 - 34691807
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| |||||||||||| | | ||||||||||| |||||||||    
34691856 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgt 34691807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 34714268 - 34714219
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| |||||||||||| | | ||||||||||| |||||||||    
34714268 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgt 34714219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 18420504 - 18420436
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| ||||||| | ||||||||||| ||||||| |||| | |||| |||||||  |||||||||    
18420504 actgacacgccaacactgctaataatttgagaaaatcacataattcaatgcaattataagtgtcggtgt 18420436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 23012459 - 23012410
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| |||||||||||| | ||||||||||||| |||||||||    
23012459 taataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgt 23012410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 12927662 - 12927717
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagaca 364  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||| |||||    
12927662 taataatttgagaaaatcatataatttagtgtaattatatatgtcagtgtcagaca 12927717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 7997236 - 7997194
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataa 332  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||    
7997236 actgacacgccaacacggataataatttgagaaaatgatataa 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 22423863 - 22423814
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||    
22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgt 22423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 15405106 - 15405070
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaatta 345  Q
    |||||||||||||||||||||||| | ||||||||||    
15405106 taataatttgaaaaaatcatataattcaatgtaatta 15405070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 17123037 - 17123105
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| ||||||| | ||||||||||| ||||||| ||||  || |  ||||||||||||||||||    
17123037 actgacacgccaacaccgctaataatttgagaaaatcacataatcaagtacaattatatatgtcggtgt 17123105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 32630793 - 32630737
Alignment:
302 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||| ||||||||||||| ||||| |||||| | ||||||||||||| |||| ||||    
32630793 acaccgataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgt 32630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 38749621 - 38749565
Alignment:
302 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||| ||||||||||||||||||| | |||| | ||||||||||||| ||| |||||    
38749621 acaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 21720558 - 21720509
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| |||||||||||| | ||||||| |||||||||||||||    
21720558 taataatttgataaaatcatataatttaatgtaactatatatgtcggtgt 21720509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 18491932 - 18491888
Alignment:
307 gataataatttgaaaaaatcatataaataaatgtaattatatatg 351  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||    
18491932 gataataatttaaaaaaatcatataatttaatgtaattatatatg 18491888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 44081628 - 44081584
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtc 353  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||    
44081628 taataatttgaaaaaatcatataatttaatgtaattatatgtgtc 44081584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 29205439 - 29205501
Alignment:
296 acaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||| ||||||||||||||||||| |||| | | |||||||| |  |||||||||    
29205439 acaccaacacggctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgt 29205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 5775409 - 5775360
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||||||| ||||||| |||| ||| ||||||||||| |||||||||    
5775409 taataatttgagaaaatcacataattaagtgtaattatatgtgtcggtgt 5775360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 21345585 - 21345528
Alignment:
308 ataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacac 365  Q
    |||||||||||||||||| | |||| | |||||||| || ||||||||||| ||||||    
21345585 ataataatttgaaaaaataacataactcaatgtaatcatttatgtcggtgtcagacac 21345528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 33950144 - 33950201
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacc 366  Q
    ||||||||||| ||||||| |||| | |||||||| |||| ||||||||| |||||||    
33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacacc 33950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 16927236 - 16927187
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||||||||||||||||||| | | ||||||||||||||| |||||    
16927236 taataatttgaaaaaatcatataattcagtgtaattatatatgttggtgt 16927187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 6427339 - 6427407
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| ||||||| | ||||||||||| ||||||| |||| | ||||||||||||| ||| |||||    
6427339 actgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgt 6427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 5927410 - 5927355
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaatta 345  Q
    |||||||| | ||||| | |||||||||||||||||||||||| | ||||||||||    
5927410 actgacacgctaacactgctaataatttgaaaaaatcatataatttaatgtaatta 5927355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 5454176 - 5454127
Alignment:
307 gataataatttgaaaaaatcatataaataaatgtaattatatatgtcggt 356  Q
    |||| |||||||||||||||| |||| ||||| |||||||||||| ||||    
5454176 gatattaatttgaaaaaatcacataattaaatataattatatatgccggt 5454127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 16164366 - 16164322
Alignment:
309 taataatttgaaaaaatcatataaataaatgtaattatatatgtc 353  Q
    ||||||||||||||||||| |||| | ||||||||||||| ||||    
16164366 taataatttgaaaaaatcacataatttaatgtaattatatgtgtc 16164322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 38503313 - 38503377
Alignment:
294 acacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    ||||||| |||| | ||||||||||| |||||||||||  | | ||||||||||| |||||||||    
38503313 acacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgt 38503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 46348453 - 46348385
Alignment:
290 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 358  Q
    |||||||| || |||| | |||||||||||||||||||||||| | | |||||||| |  |||||||||    
46348453 actgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgt 46348385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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