View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_low_10 (Length: 381)
Name: NF3300_low_10
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 10640564 - 10640271
Alignment:
| Q |
1 |
gctacctaaacaatatttgaacagtagattattcgacatataaaaccaacaaaataacctccatcatcttaaatgactatacttctcaagcaagaatata |
100 |
Q |
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| T |
10640564 |
gctacctaaacaatattttaacag---attattcgacatataaaaccaacaaaataacctcgatcattttaaatgactatacttctcaagcaagaatata |
10640468 |
T |
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| Q |
101 |
cttattagaactagaattacagcttaaataacatgcaaaaagtaattgatttttcaatttgacttaaagtgacaccaatggtgctgagttgtttaacatt |
200 |
Q |
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| T |
10640467 |
cttattagaactagaattacagcttaaattacatgcaaaaagtaattgatttttcaatttgacttaaagtgacaccaatggtgctgagttgtttaacatt |
10640368 |
T |
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| Q |
201 |
gaatcagcttaagaattacagcatgtggaaattattcagcttaagaataactagatcttagaaagagcatagatatgaaaagataattaccttcaag |
297 |
Q |
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| T |
10640367 |
gaatcagcttaagaattacagcatgtggaaattattcagcttaagaataactagatcttagaaagagcatagatatgaaaagataattaccttcaag |
10640271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 10640236 - 10640203
Alignment:
| Q |
332 |
gacgttgttgagaatcgacgccgtccaaggtaac |
365 |
Q |
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| T |
10640236 |
gacgttgttgagaatcgacgccgtccaaggtaac |
10640203 |
T |
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