View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_low_11 (Length: 378)

Name: NF3300_low_11
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_low_11
NF3300_low_11
[»] chr2 (13 HSPs)
chr2 (1-289)||(15534177-15534465)
chr2 (83-289)||(15517664-15517873)
chr2 (138-280)||(15654639-15654781)
chr2 (155-280)||(15645587-15645712)
chr2 (138-280)||(15624962-15625104)
chr2 (300-368)||(15534000-15534068)
chr2 (160-280)||(15601370-15601490)
chr2 (169-289)||(15493838-15493958)
chr2 (54-138)||(15534437-15534526)
chr2 (301-372)||(15645397-15645468)
chr2 (301-372)||(15654449-15654520)
chr2 (301-372)||(15624772-15624843)
chr2 (301-372)||(15493657-15493728)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 15534465 - 15534177
Alignment:
Q  1 ttaataaatttatctctaatttatttttatatctaacatatatacatttaactctaatttgacaactctacaaggttttattccttgtgtgcatacacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15534465 ttaataaatttatctctaatttatttttatatctaacatatatacatttaactctaatttgacaactctacaaggttttattccttgtgtgcatacacaa 15534366  T
Q  101 ttatcctacttaataaatttaactctaatttatttttacatatctatattttatctaacatatatacattttcttatgatagaatgtaaagaagataatg 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15534365 ttatcctacttaataaatttaactctaatttatttttacttatctatattttatctaacatatatacattttcatatgatagaatgtaaagaagataatg 15534266  T
Q  201 ttgccagcacaaataaagttgaaaaactctgaacgcttgactgcacaagagttattctcaaatgagcataaaaaactaagggaggatgc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  15534265 ttgccagcacaaataaagttgaaaaactctgaacgcttgactgcacaagagttattctcaaatgagcatgcaaaactaagggaggatgc 15534177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 83 - 289
Target Start/End: Complemental strand, 15517873 - 15517664
Alignment:
Q  83 ccttgtgtgcatacacaattatcctac-----ttaataaatttaactctaatttatttttacatatctatattttatctaacatatatacattttcttat 177  Q
    |||||||||||||||||||||||||||     |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  15517873 ccttgtgtgcatacacaattatcctaccgtccttaataaatttaact--aatttatttttacatttctatattttatctaacatatatacattttcatat 15517776  T
Q  178 gatagaatgtaaagaagataatgttgccagcacaaataaagttgaaaaactctgaacgcttgactgcacaagagttattctcaaatgagcataaaaaact 277  Q
    ||||||||||||||||||||||| |||| ||||| || |||| |||||||||  || || |||||||| ||||  | ||||||||||||||| |||||||    
T  15517775 gatagaatgtaaagaagataatgctgcccgcacagattaagtcgaaaaactccaaaggcgtgactgcagaagaactgttctcaaatgagcatgaaaaact 15517676  T
Q  278 aagggaggatgc 289  Q
    |||||| |||||    
T  15517675 aagggaagatgc 15517664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 15654781 - 15654639
Alignment:
Q  138 acatatctatattttatctaacatatatacattttcttatgatagaatgtaaagaagataatgttgccagcacaaataaagttgaaaaactctgaacgct 237  Q
    ||||||||||||||||  |||| ||||||||||||| | ||| |||| |||||||||||||||||||| ||||| |||||| ||| |||||||||| |||    
T  15654781 acatatctatattttacttaacgtatatacattttcatgtgacagaaagtaaagaagataatgttgcctgcacagataaagatgagaaactctgaaggct 15654682  T
Q  238 tgactgcacaagagttattctcaaatgagcataaaaaactaag 280  Q
    | |||||||||||| ||||||||| ||||||| ||| ||||||    
T  15654681 ttactgcacaagagctattctcaattgagcatgaaacactaag 15654639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 15645712 - 15645587
Alignment:
Q  155 ctaacatatatacattttcttatgatagaatgtaaagaagataatgttgccagcacaaataaagttgaaaaactctgaacgcttgactgcacaagagtta 254  Q
    ||||||||||||||||||| | ||| |||| |||||||||||||||||||| ||||| |||||| ||| |||||||||| |||| |||||||||||| ||    
T  15645712 ctaacatatatacattttcatgtgacagaaagtaaagaagataatgttgcctgcacagataaagatgagaaactctgaaggctttactgcacaagagcta 15645613  T
Q  255 ttctcaaatgagcataaaaaactaag 280  Q
    ||||||| ||||||| ||| ||||||    
T  15645612 ttctcaattgagcatgaaacactaag 15645587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 15625104 - 15624962
Alignment:
Q  138 acatatctatattttatctaacatatatacattttcttatgatagaatgtaaagaagataatgttgccagcacaaataaagttgaaaaactctgaacgct 237  Q
    ||||| ||||||||||  |||||||||||||||||| | ||| |||| |||||||||||||||||||| | ||| |||||| ||| |||||||||| |||    
T  15625104 acatagctatattttacttaacatatatacattttcatgtgacagaaagtaaagaagataatgttgcctggacagataaagatgagaaactctgaaggct 15625005  T
Q  238 tgactgcacaagagttattctcaaatgagcataaaaaactaag 280  Q
    | || ||||||||| ||||||||| ||||||| ||| ||||||    
T  15625004 ttacagcacaagagctattctcaattgagcatgaaacactaag 15624962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 15534068 - 15534000
Alignment:
Q  300 cggaaaaccaaactacttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcat 368  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15534068 cggaaaaccaaactagttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcat 15534000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 15601490 - 15601370
Alignment:
Q  160 atatatacattttcttatgatagaatgtaaagaagataatgttgccagcacaaataaagttgaaaaactctgaacgcttgactgcacaagagttattctc 259  Q
    ||||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||  ||| |||||||||| || | |||||||||||  | |||||    
T  15601490 atataaacattttcatatgatagaaagtaaagaagataatgctgccagcacaaataaacatgagaaactctgaaggccttactgcacaagaagtcttctc 15601391  T
Q  260 aaatgagcataaaaaactaag 280  Q
    ||| |||||| ||||||||||    
T  15601390 aaaagagcatcaaaaactaag 15601370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 15493958 - 15493838
Alignment:
Q  169 ttttcttatgatagaatgtaaagaagataatgttgccagcacaaataaagttgaaaaactctgaacgcttgactgcacaagagttattctcaaatgagca 268  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||  ||  | |||||||| ||||  | ||||| ||||||||    
T  15493958 ttttcgtatgatagaaagtaaagaagataatgttgccagcacaaattaagtcaaaaaactccaaagacatgactgcagaagaactgttctcgaatgagca 15493859  T
Q  269 taaaaaactaagggaggatgc 289  Q
    | ||||||||||||| |||||    
T  15493858 tgaaaaactaagggaagatgc 15493838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 15534526 - 15534437
Alignment:
Q  54 ctaatttgacaactctacaaggttttattccttgtgtgcatacacaattatcct-----acttaataaatttaactctaatttattttta 138  Q
    ||||||||||||||||||| ||||||| || |||| |||||||| |||||||||     |||||||||||||| ||||||||||||||||    
T  15534526 ctaatttgacaactctacagggttttactcattgtttgcatacagaattatcctactttacttaataaatttatctctaatttattttta 15534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 15645468 - 15645397
Alignment:
Q  301 ggaaaaccaaactacttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcatctca 372  Q
    ||||||||| |||| ||||  |||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  15645468 ggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctgcattcatctca 15645397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 15654520 - 15654449
Alignment:
Q  301 ggaaaaccaaactacttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcatctca 372  Q
    ||||||||| |||| ||||  |||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  15654520 ggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctgcattcatctca 15654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 15624843 - 15624772
Alignment:
Q  301 ggaaaaccaaactacttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcatctca 372  Q
    ||||||||| |||| ||||  |||||| |||||||||| ||||||| ||||||||||| |||||||||||||    
T  15624843 ggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatttgcattcatctca 15624772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 15493728 - 15493657
Alignment:
Q  301 ggaaaaccaaactacttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcatctca 372  Q
    ||||||||||||||||||| |||| || |||||||||| ||||||| ||||||  ||| |||||| ||||||    
T  15493728 ggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagacacatttgcatttatctca 15493657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University