View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3300_low_12 (Length: 372)
Name: NF3300_low_12
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 12508901 - 12508550
Alignment:
| Q |
7 |
tccaagaatataaactccacttccaaaacaacactcaaatccaaa---accaannnnnnnagctaatctaagcnnnnnnnn--ttatgtctggaactgaa |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
12508901 |
tccaataatataaactccacttccaaaacaacactcaaatccaaactcaacaatttttttagccaatctaagcaaaaaaaaaattatgtctggaactgaa |
12508802 |
T |
|
| Q |
102 |
gctacaaaatatgcttctgctacaaacaacataaccaaatcnnnnnnnccaaacatgagaagattcattggtgtgagacaaaggccatcaggtagatggg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12508801 |
gctacaaaatatgcttctgctacaaacaacataaccaaatcaaaaaaaccgaacatgagaagattcattggtgtgagacaaaggccatcaggtagatggg |
12508702 |
T |
|
| Q |
202 |
tagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttacgacgaagctgctcgagc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12508701 |
tagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttacgacgaagctgctcgagc |
12508602 |
T |
|
| Q |
302 |
tttacgcggagaaaatgctcgaaccaacttcgccctagcagtatcaacagac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12508601 |
tttacgcggagaaaatgctcgaaccaacttcgccctagcagtatcaacagac |
12508550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 33274393 - 33274267
Alignment:
| Q |
169 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga |
268 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||||||||||||| || |||| | ||||| | ||||||||||| | ||| ||| | || || |
|
|
| T |
33274393 |
ttggtgttaggcaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga |
33274294 |
T |
|
| Q |
269 |
agctgctcgagcttacgacgaagctgc |
295 |
Q |
| |
|
||| ||| ||||||| || |||||||| |
|
|
| T |
33274293 |
agcagctagagcttatgatgaagctgc |
33274267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 3160220 - 3160268
Alignment:
| Q |
169 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaaga |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
3160220 |
ttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaaga |
3160268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 46024054 - 46024103
Alignment:
| Q |
174 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
223 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
46024054 |
gtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatc |
46024103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 46265313 - 46265264
Alignment:
| Q |
174 |
gtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatc |
223 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
46265313 |
gtgaggcaaaggccatcaggaagatggatagctgagatcaaagactcatc |
46265264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University