View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_low_15 (Length: 313)
Name: NF3300_low_15
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_15 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 10359682 - 10359989
Alignment:
| Q |
9 |
agcataggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacat |
108 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10359682 |
agcagaggttgtaagaatttcggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgactt |
10359781 |
T |
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| Q |
109 |
ata-----------------agct---aaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactt |
188 |
Q |
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| T |
10359782 |
atacagcaaggaagttttttagcttgtaaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactt |
10359881 |
T |
|
| Q |
189 |
tcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatat |
288 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10359882 |
tctcgaagagaaatgaaacg-aaaatggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatat |
10359980 |
T |
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| Q |
289 |
aggaatatg |
297 |
Q |
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||||||||| |
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| T |
10359981 |
aggaatatg |
10359989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 9981444 - 9981268
Alignment:
| Q |
120 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
9981444 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacg-aaaatggatc |
9981346 |
T |
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| Q |
220 |
ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatg |
297 |
Q |
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| T |
9981345 |
ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatg |
9981268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 9994855 - 9994758
Alignment:
| Q |
14 |
aggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9994855 |
aggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttata |
9994758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 10035804 - 10035698
Alignment:
| Q |
145 |
atattcattcagatcattctttcagatcaaatatatata--cactttcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaac |
242 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
10035804 |
atattcattcagatcattctttcagatgaaatatatatatacactttctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaac |
10035706 |
T |
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| Q |
243 |
tatatgat |
250 |
Q |
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|||||||| |
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| T |
10035705 |
tatatgat |
10035698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 10035952 - 10035899
Alignment:
| Q |
58 |
atctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata |
111 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
10035952 |
atctcagtagacaagttttggccttagcagtgaaacttaaaaagatgacttata |
10035899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 10130816 - 10130768
Alignment:
| Q |
249 |
attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatg |
297 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10130816 |
atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatg |
10130768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 10372199 - 10372247
Alignment:
| Q |
249 |
attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatg |
297 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10372199 |
atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatg |
10372247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 11778244 - 11778327
Alignment:
| Q |
180 |
tatacactttcttgaagagaaatgaaacgaa---aaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaa |
260 |
Q |
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||||||||||||||||| ||||||||| ||| || |||||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
11778244 |
tatacactttcttgaagcgaaatgaaatgaattaaactggatcttaaggtcagagccaggttcaactatatgattttgaagaaa |
11778327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 120 - 297
Target Start/End: Original strand, 53693 - 53869
Alignment:
| Q |
120 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
53693 |
gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacg-aaaatggatc |
53791 |
T |
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| Q |
220 |
ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatg |
297 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53792 |
ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatg |
53869 |
T |
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