View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_low_16 (Length: 307)

Name: NF3300_low_16
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_low_16
NF3300_low_16
[»] chr2 (1 HSPs)
chr2 (20-299)||(11238967-11239246)
[»] chr4 (2 HSPs)
chr4 (63-101)||(52584421-52584459)
chr4 (68-117)||(46864440-46864489)
[»] chr7 (1 HSPs)
chr7 (63-119)||(30750036-30750092)
[»] chr3 (2 HSPs)
chr3 (63-120)||(5043904-5043961)
chr3 (71-119)||(2348543-2348591)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 11238967 - 11239246
Alignment:
Q  20 gctctctctcttttcgttgtattttcagttgcagannnnnnnnacaaccgccatgaccaatttgtgaaggatggcggtgccacgg-tgttttatggtgga 118  Q
    ||||||||| ||||||||| ||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  11238967 gctctctcttttttcgttgcattttcagtggcagattttttt-acaaccgccatgaccaatttgtgaaggatggcggtgccacgggtgttttatggcgga 11239065  T
Q  119 taaatattacttttgggaggttgactttcttcctaggattttaattagtttttgaatattcaagtatacaacattgtaatgatgtgatgaactataaatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11239066 taaatattacttttgggaggttgactttcttcctaggattttaattagtttttgaatattcaagtatacaacattgtaatgatgtgatgaactataaatt 11239165  T
Q  219 ctatattttttatcattaggaatcgaactcgttaccctggtgttcttgacagttctttttctgtcacttcccgcctatgct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  11239166 ctatattttttatcattaggaatcgaactcgttaccctggtgttcttgacagttctttttctgtcacttccctcccatgct 11239246  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 52584459 - 52584421
Alignment:
Q  63 acaaccgccatgaccaatttgtgaaggatggcggtgcca 101  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52584459 acaaccgccatgaccaatttgtgaaggatggcggtgcca 52584421  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 46864440 - 46864489
Alignment:
Q  68 cgccatgaccaatttgtgaaggatggcggtgccacggtgttttatggtgg 117  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||||||||    
T  46864440 cgccatggccaatttgtgaaggatggcgacgccatggtgttttatggtgg 46864489  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 30750036 - 30750092
Alignment:
Q  63 acaaccgccatgaccaatttgtgaaggatggcggtgccacggtgttttatggtggat 119  Q
    |||||||||| | |||||||||||| ||||||||||||| |||||| ||||||||||    
T  30750036 acaaccgccacggccaatttgtgaaagatggcggtgccatggtgttctatggtggat 30750092  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 5043961 - 5043904
Alignment:
Q  63 acaaccgccatgaccaatttgtgaaggatggcggtgccacggtgttttatggtggata 120  Q
    |||||| |||||| ||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  5043961 acaaccaccatgatcaattcgtgaacgatggcggtgccatggtgtttcatggtggata 5043904  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 2348543 - 2348591
Alignment:
Q  71 catgaccaatttgtgaaggatggcggtgccacggtgttttatggtggat 119  Q
    |||| ||||||||||||||||||| |||||  |||||||||||| ||||    
T  2348543 catggccaatttgtgaaggatggcagtgccctggtgttttatggaggat 2348591  T

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