View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3300_low_2 (Length: 534)
Name: NF3300_low_2
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 2328847 - 2328344
Alignment:
| Q |
18 |
aaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2328847 |
aaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaa |
2328748 |
T |
|
| Q |
118 |
acgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttccttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2328747 |
acgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttccttt |
2328648 |
T |
|
| Q |
218 |
ttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatgtaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2328647 |
ttgcattcttgaatagcagcttcccttgacataccatattgcttcatatagcaatccagcaatgagcaaacatgtcctcttttacgttcaaactatgtaa |
2328548 |
T |
|
| Q |
318 |
tnnnnnnnnnnnnnntcaatgcaacaatttctattgtgtaaaaaacttacattagagagaaataaagcttaaattttctatatatctagatatagatgtg |
417 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2328547 |
t---aaaaaaaaaaatcaatgcaacaatttctattgtgtaaaaaacttacattagagagaaataaagcttaaattttctatatatctagatatagatgtg |
2328451 |
T |
|
| Q |
418 |
atatataaatacctcactggtcacaatttcatccattagtctacaaatagtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2328450 |
atatataaatacctcactggtcacaatttcatccattagtctacaaatagtagaaattgcatcaacaatttttggccaattagatacccacttgaaaatg |
2328351 |
T |
|
| Q |
518 |
ttctctg |
524 |
Q |
| |
|
||||||| |
|
|
| T |
2328350 |
ttctctg |
2328344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 83 - 311
Target Start/End: Original strand, 14264766 - 14264994
Alignment:
| Q |
83 |
tagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccg |
182 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||| |||||||| |
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|
| T |
14264766 |
tagttatctttatctgtgtaaaacacatccataaaacgcgaaaaattgagagcgcgagttagaaaatccattggaacttcggttggccttagacattctt |
14264865 |
T |
|
| Q |
183 |
aatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatga |
282 |
Q |
| |
|
|||| | |||||||||| ||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||| | |||||| |
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|
| T |
14264866 |
tgtttatatctttccaagcgattgcaactctcttttggcattcttgaatagcagcttccctagtcataccatattgttttatatagcaatccaacaatga |
14264965 |
T |
|
| Q |
283 |
gcaaacatgtcctcttttacgttcaaact |
311 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
14264966 |
gcaaacatgtcctcttttatgttcaaact |
14264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 45 - 301
Target Start/End: Complemental strand, 25835054 - 25834798
Alignment:
| Q |
45 |
ctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttag |
144 |
Q |
| |
|
|||||| |||| |||||| |||||||||||| ||||||| || |||| |||||||||| |||||||||||||||| || |||||||| || | || |
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|
| T |
25835054 |
ctttgacatatttcttcataagtccttcagaatgtgtgtaattgtctttatctttgtaattcacatccataaaacgcgaaaaattgagagcacgaataag |
25834955 |
T |
|
| Q |
145 |
aaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttcccta |
244 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
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|
| T |
25834954 |
aaaaggcattggaactttggttggcctaagacattcctcatttatatctttccaagcaattgcaattcccttatggcattcttgaatagcagcttcccta |
25834855 |
T |
|
| Q |
245 |
gacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctctttta |
301 |
Q |
| |
|
|||||| |||| |||||||| |||||||| | |||||||||||||||| |||||||| |
|
|
| T |
25834854 |
gacatatcatactgcttcatgtagcaatccaacaatgagcaaacatgttctctttta |
25834798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 313
Target Start/End: Complemental strand, 31201728 - 31201499
Alignment:
| Q |
84 |
agttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccga |
183 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||||| | || || ||| ||| || ||||| ||||||||||||| ||||| |||| ||||||| |
|
|
| T |
31201728 |
agttatctttatctttataaacgacatccataaaacgtgacagatttagaatgcgtgtaagaaaaggcattggaacttcagttggtctaaaacattcctt |
31201629 |
T |
|
| Q |
184 |
atttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgag |
283 |
Q |
| |
|
||| | | ||||||||||| |||||| ||| | ||||||||| |||||||||||||| | | ||||||| |||||||||| || | |||||| |
|
|
| T |
31201628 |
attcatatctttccaagcatcagcaattctatttcgaccttcttgaatggcagcttccctagagacattatattgcctcatatagcattccaagaatgag |
31201529 |
T |
|
| Q |
284 |
caaacatgtcctcttttacgttcaaactat |
313 |
Q |
| |
|
||||||| |||||| ||||||||||| |
|
|
| T |
31201528 |
gtaacatgttctctttcttgttcaaactat |
31201499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 41349278 - 41349562
Alignment:
| Q |
29 |
ggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggt |
128 |
Q |
| |
|
||||||||||| | || ||| || ||||||||||| |||||||| | |||| ||||||||| |||||| ||||| |||||||| ||||| | | || |
|
|
| T |
41349278 |
ggatcaacaagtaaagatttaatgaatgacttcatttctccttcaggatgtgtaaagttatctttatctttataaaccacatccatgaaacgtgataagt |
41349377 |
T |
|
| Q |
129 |
tgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttg |
228 |
Q |
| |
|
| ||| ||| | ||||| ||||||| ||| | ||||| | |||||||||| ||| | | ||||||||||| | ||||| |||| | |||||| |
|
|
| T |
41349378 |
ttagaatgcgcatcagaaaaggcattgaaacctcggttgacataagacattctttattaatatctttccaagcatctacaattctctttcgaccttcttg |
41349477 |
T |
|
| Q |
229 |
aatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactat |
313 |
Q |
| |
|
||| ||| |||| ||||| ||| ||||||| |||||||||| || | |||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
41349478 |
aatggcaacttctctagagatattatattgcctcatatagcattccaagaatgaggaaacatgttctcttttttgttcaaactat |
41349562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 20602825 - 20603118
Alignment:
| Q |
18 |
aaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaa |
117 |
Q |
| |
|
|||||||||| |||||||| | || |||| ||| ||| |||||||||||| | |||| ||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
20602825 |
aaattggaacaggatcaaccaacacttctttaataaatgtcttcattagtccgttagaatccgtgtagttatctttgtttttgtaaataacatccataaa |
20602924 |
T |
|
| Q |
118 |
acgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttccttt |
217 |
Q |
| |
|
||||| ||| |||||| | | | | ||| |||||||||||||||||||||||||||||||| ||||| | |||||||| |||||| ||| ||| |
|
|
| T |
20602925 |
acgcgaaagattgagaacacaaatcataaaaggcattggaactttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctattt |
20603024 |
T |
|
| Q |
218 |
ttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaact |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20603025 |
ttgcattcttgaatagcagcttctctagacatatcaaattgcttcatataacaatctaacaatgagcaaacatgtcctcttttctgttcaaact |
20603118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 58 - 310
Target Start/End: Original strand, 20621854 - 20622106
Alignment:
| Q |
58 |
cttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcgcaaggttgagagcgcgggttagaaacggcattgga |
157 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| | ||||||||| |||||||||||||||| |||||| ||| | | || | ||| ||||||||| |
|
|
| T |
20621854 |
cttcattagtctgttagaatctgtgtagttatcttcgtttttgtaaacaacatccataaaacgcgaaaggttaagaacacaagtcataaaaggcattgga |
20621953 |
T |
|
| Q |
158 |
actttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttcctttttgcattcttgaatagcagcttccctagacataccatatt |
257 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||| |||||| ||| |||||||||||||||||||||||||| || |||||| || ||| |
|
|
| T |
20621954 |
actttggttggcctaagacattcttcatttatatctttccaaacaattgtcattctatttttgcattcttgaatagcagcttctctcgacatatcaaatt |
20622053 |
T |
|
| Q |
258 |
gcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaac |
310 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| || |||||||| |||||||| |
|
|
| T |
20622054 |
gcttcatataacaatctaacaatgagcaaacttgccctcttttctgttcaaac |
20622106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 17183391 - 17183092
Alignment:
| Q |
18 |
aaattggaactggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaa |
117 |
Q |
| |
|
||||||| || ||||| ||||| | |||||| || |||| ||||||| ||||| |||| | |||||||| ||||||| || |||| |||||||||||| |
|
|
| T |
17183391 |
aaattggcaccggatctacaagcaaagctttaatgtatgtcttcatttctcctttagaatgcgtgtagttgtcttcatgcttataaattacatccataaa |
17183292 |
T |
|
| Q |
118 |
acgcgcaaggttgagagcgcgggttagaaacggcattggaactttggttggcctaagacattccgaatttacaactttccaagcaattgcaatttccttt |
217 |
Q |
| |
|
||||| || |||| | ||| |||||||| || ||||||||||||||||| |||||||||| ||||| | ||||||||||| | ||| | ||| |
|
|
| T |
17183291 |
acgcgagagattgacaatgcgagttagaaaaagcgttggaactttggttggcttaagacattcttcatttatatctttccaagcattaacaactcttttt |
17183192 |
T |
|
| Q |
218 |
ttgcattcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatgtaa |
317 |
Q |
| |
|
| |||||||||||||| |||||| ||||| ||| |||| |||||||||||| || | |||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
17183191 |
tggcattcttgaatagaagcttctctagatatattgtattccttcatatagcattccaagaatgaggaaacatgtcctcttttatgttcaaactgtgtaa |
17183092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 25794272 - 25794181
Alignment:
| Q |
223 |
ttcttgaatagcagcttccctagacataccatattgcttcatatagcaatctagcaatgagcaaacatgtcctcttttacgttcaaactatg |
314 |
Q |
| |
|
||||||||| |||||||||||||||| | |||||| |||||||| || || || |||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
25794272 |
ttcttgaatggcagcttccctagacacatcatattctttcatataacactccaggaatgaggaaacatgttctcttttttgttcaaactatg |
25794181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 25794469 - 25794373
Alignment:
| Q |
26 |
actggatcaacaagaacagctttgatatatgacttcattagtccttcagaacgtgtgtagttatcttcatctttgtaaactacatccataaaacgcg |
122 |
Q |
| |
|
|||||||| ||||| | |||||| || ||| ||||||| |||||||| | ||| ||||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
25794469 |
actggatctacaagcaaagctttaatgaatgtcttcatttctccttcagtgtgagtgaagttatctttatctttataaactacgtccataaaacgcg |
25794373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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