View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_low_20 (Length: 250)

Name: NF3300_low_20
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_low_20
NF3300_low_20
[»] chr5 (5 HSPs)
chr5 (1-196)||(4173149-4173345)
chr5 (148-196)||(20985554-20985602)
chr5 (148-194)||(34693243-34693289)
chr5 (148-196)||(3031832-3031880)
chr5 (148-196)||(31626101-31626149)
[»] chr8 (7 HSPs)
chr8 (148-196)||(34641543-34641591)
chr8 (150-196)||(10591898-10591944)
chr8 (149-195)||(23708975-23709021)
chr8 (149-186)||(38675602-38675639)
chr8 (148-196)||(22836164-22836212)
chr8 (148-196)||(28156201-28156249)
chr8 (148-196)||(32674257-32674305)
[»] chr2 (9 HSPs)
chr2 (149-195)||(11152725-11152771)
chr2 (150-195)||(18749389-18749434)
chr2 (148-196)||(19637227-19637275)
chr2 (148-196)||(19835820-19835868)
chr2 (150-196)||(6328667-6328713)
chr2 (151-196)||(9384376-9384421)
chr2 (151-196)||(34373006-34373051)
chr2 (148-196)||(30339991-30340039)
chr2 (150-186)||(35705951-35705987)
[»] chr3 (9 HSPs)
chr3 (149-194)||(7351665-7351710)
chr3 (148-194)||(9159063-9159109)
chr3 (150-196)||(47141625-47141671)
chr3 (150-196)||(52100261-52100307)
chr3 (148-196)||(9027611-9027659)
chr3 (148-176)||(45186597-45186625)
chr3 (148-196)||(45517682-45517730)
chr3 (150-194)||(48205045-48205089)
chr3 (148-196)||(50025723-50025771)
[»] chr1 (5 HSPs)
chr1 (148-196)||(1100215-1100263)
chr1 (149-195)||(8577528-8577574)
chr1 (148-196)||(11038260-11038308)
chr1 (150-194)||(23400016-23400060)
chr1 (150-194)||(40118742-40118786)
[»] chr7 (6 HSPs)
chr7 (148-195)||(41538480-41538527)
chr7 (147-180)||(5378624-5378657)
chr7 (151-196)||(17039158-17039203)
chr7 (148-196)||(640390-640438)
chr7 (151-195)||(23034339-23034383)
chr7 (147-195)||(48639409-48639457)
[»] chr6 (1 HSPs)
chr6 (150-192)||(6997579-6997621)
[»] scaffold0514 (1 HSPs)
scaffold0514 (150-194)||(1872-1916)
[»] scaffold0178 (1 HSPs)
scaffold0178 (150-186)||(9776-9812)
[»] scaffold0009 (1 HSPs)
scaffold0009 (148-196)||(5095-5143)
[»] chr4 (1 HSPs)
chr4 (148-196)||(29577461-29577509)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 4173345 - 4173149
Alignment:
Q  1 ctaccgcaccttaatttcttccattacacccatcattgtcaa-tagtcaaagagcatgcggtataatcacgaactcataacaaaataaaaaactaacaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4173345 ctaccgcaccttaatttcttccattacacccatcattgtcaaatagtcaaagagcatgcgggataatcacgaactcataacaaaataaaaaactaacaaa 4173246  T
Q  100 ttaaaatacattgttaggtctttggaatgaaacatgaaggtttggctgaagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| || |||||||||    
T  4173245 ttaaaatacattgttaggtctttggaatgaaacatgaaggtttggcagaagagaaaaaatatttgtacaatcatttttatataacttatgtacaact 4173149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 20985602 - 20985554
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  20985602 aagagaaatgatatttgtacaaccatttttgtataatttttgtacaact 20985554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 34693289 - 34693243
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    |||||||| ||||||||||||| ||||||| |||||||| |||||||    
T  34693289 aagagaaatgatatttgtacaatcatttttgtataatttttgtacaa 34693243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 3031832 - 3031880
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| || || || |||||||||    
T  3031832 aagagaaatgatatttgtacaaccatttttgtacaacttttgtacaact 3031880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 31626149 - 31626101
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||| ||||||  |||||||| |||||||||    
T  31626149 aagagaaatgatatttgtacaatcattttggtataatttttgtacaact 31626101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 34641543 - 34641591
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  34641543 aagagaaatgatatttgtacaaccatttttatataatttttgtgcaact 34641591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 10591944 - 10591898
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||| |||||||||||||| |||||||||||| || |||||||||    
T  10591944 gagaaatgatatttgtacaactatttttatataacttttgtacaact 10591898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 23708975 - 23709021
Alignment:
Q  149 agagaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||||||    
T  23708975 agagaaatgatatttgtacaaccatttttgtataacttttgtacaac 23709021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 38675602 - 38675639
Alignment:
Q  149 agagaaaagatatttgtacaaccatttttatataattt 186  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  38675602 agagaaatgatatttgtacaaccatttttctataattt 38675639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 22836212 - 22836164
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| |||||||||||||||||||| ||| || || |||||||||    
T  22836212 aagagaaatgatatttgtacaaccattttcatacaaattttgtacaact 22836164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 28156201 - 28156249
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||  || ||||| |||||||||    
T  28156201 aagagaaatgatatttgtacaaccattttggtacaatttttgtacaact 28156249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 32674305 - 32674257
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||  ||||| || |||||||||    
T  32674305 aagagaaatgatatttgtacaaccattttggtataacttttgtacaact 32674257  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 11152771 - 11152725
Alignment:
Q  149 agagaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  11152771 agagaaatgatatttgtacaatcatttttatataatttttgtacaac 11152725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 18749434 - 18749389
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||    
T  18749434 gagaaatgatatttgtacaaccatttttgtataatttttgtacaac 18749389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 19637227 - 19637275
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| ||||| || |||||||||    
T  19637227 aagagaaatgatatttgtacaaccatttttgtataacttttgtacaact 19637275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 19835820 - 19835868
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| ||||| || |||||||||    
T  19835820 aagagaaatgatatttgtacaaccatttttgtataacttttgtacaact 19835868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 6328667 - 6328713
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||| ||||||||||||||||||||  |||||||| |||||||||    
T  6328667 gagaaatgatatttgtacaaccattttggtataatttttgtacaact 6328713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 9384376 - 9384421
Alignment:
Q  151 agaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    ||||| |||||||||||||| ||||||| ||||||| |||||||||    
T  9384376 agaaatgatatttgtacaactatttttacataatttttgtacaact 9384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 34373006 - 34373051
Alignment:
Q  151 agaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||    
T  34373006 agaaatgatatttgtacaaccattttggtataatttttgtacaact 34373051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 30339991 - 30340039
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| || || || |||||||||    
T  30339991 aagagaaatgatatttgtacaaccatttttgtacaacttttgtacaact 30340039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 35705987 - 35705951
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataattt 186  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  35705987 gagaaatgatatttgtacaaccatttttgtataattt 35705951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 7351710 - 7351665
Alignment:
Q  149 agagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||    
T  7351710 agagaaatgatatttgtacaaccatttttgtataatttttgtacaa 7351665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 9159109 - 9159063
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    |||||||| ||||||||||||||||||||| || ||||| |||||||    
T  9159109 aagagaaatgatatttgtacaaccatttttgtacaatttttgtacaa 9159063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 47141671 - 47141625
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||| ||||||||||||||||||||  |||||||| |||||||||    
T  47141671 gagaaatgatatttgtacaaccattttggtataatttttgtacaact 47141625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 52100261 - 52100307
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||| |||||||||||||||||||||  ||||||| |||||||||    
T  52100261 gagaaatgatatttgtacaaccattttttaataatttttgtacaact 52100307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 9027611 - 9027659
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| | |||||||||||||||||||||| || || |||||||||    
T  9027611 aagagaaatgttatttgtacaaccatttttatacaacttttgtacaact 9027659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 45186625 - 45186597
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttt 176  Q
    |||||||||||||||||||||||||||||    
T  45186625 aagagaaaagatatttgtacaaccatttt 45186597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 45517730 - 45517682
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| ||||| || |||| ||||    
T  45517730 aagagaaatgatatttgtacaaccatttttgtataacttttgtataact 45517682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 48205045 - 48205089
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    |||||| ||||||||||||| ||||||| |||||||| |||||||    
T  48205045 gagaaatgatatttgtacaatcatttttgtataatttttgtacaa 48205089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 50025771 - 50025723
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||  ||||| || |||||||||    
T  50025771 aagagaaatgatatttgtacaaccattttggtataaattttgtacaact 50025723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 1100215 - 1100263
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||||||||||||||||| || ||||| |||||||||    
T  1100215 aagagaaatgatatttgtacaaccatttttgtacaatttttgtacaact 1100263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 8577574 - 8577528
Alignment:
Q  149 agagaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||||||    
T  8577574 agagaaatgatatttgtacaaccatttttgtataacttttgtacaac 8577528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 11038260 - 11038308
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||| ||||||||||||  |||||||| |||||||||    
T  11038260 aagagaaatgatatttatacaaccattttggtataatttttgtacaact 11038308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 23400060 - 23400016
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    |||||| |||||||||||||||||||||||| || || |||||||    
T  23400060 gagaaatgatatttgtacaaccatttttatacaacttttgtacaa 23400016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 40118786 - 40118742
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    |||||| ||||||||||||| ||||||| |||||||| |||||||    
T  40118786 gagaaatgatatttgtacaatcatttttgtataatttttgtacaa 40118742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 41538480 - 41538527
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    |||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  41538480 aagagaaatgatatttgtacaaccatttttgtacaatttttgtacaac 41538527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 5378624 - 5378657
Alignment:
Q  147 gaagagaaaagatatttgtacaaccatttttata 180  Q
    ||||||||| ||||||||||||||||||||||||    
T  5378624 gaagagaaatgatatttgtacaaccatttttata 5378657  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 17039158 - 17039203
Alignment:
Q  151 agaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    ||||| |||||||||||||| |||||| |||||||| |||||||||    
T  17039158 agaaatgatatttgtacaactatttttgtataatttttgtacaact 17039203  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 640390 - 640438
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||| ||| ||||||||||||||||||||| || ||||| |||||||||    
T  640390 aagaaaaatgatatttgtacaaccatttttgtacaatttttgtacaact 640438  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 23034383 - 23034339
Alignment:
Q  151 agaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    ||||| ||||||||||||||||||||| || ||||| ||||||||    
T  23034383 agaaatgatatttgtacaaccatttttgtacaatttttgtacaac 23034339  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 48639457 - 48639409
Alignment:
Q  147 gaagagaaaagatatttgtacaaccatttttatataatttgtgtacaac 195  Q
    ||||||||| ||||||||||||||||||||| || || || ||||||||    
T  48639457 gaagagaaatgatatttgtacaaccatttttgtacaacttttgtacaac 48639409  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 6997621 - 6997579
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtac 192  Q
    |||||| ||||||||||||||||||||| |||||||| |||||    
T  6997621 gagaaatgatatttgtacaaccatttttgtataatttttgtac 6997579  T

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Target: scaffold0514 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 1916 - 1872
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataatttgtgtacaa 194  Q
    |||||| ||||||||||||||||||||| ||||| || |||||||    
T  1916 gagaaatgatatttgtacaaccatttttgtataacttttgtacaa 1872  T

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Target: scaffold0178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 9776 - 9812
Alignment:
Q  150 gagaaaagatatttgtacaaccatttttatataattt 186  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  9776 gagaaatgatatttgtacaaccatttttttataattt 9812  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 5143 - 5095
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| ||||||| || ||||||||||||| ||||| |||||||||    
T  5143 aagagaaatgatatttatataaccatttttatagaatttttgtacaact 5095  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 29577509 - 29577461
Alignment:
Q  148 aagagaaaagatatttgtacaaccatttttatataatttgtgtacaact 196  Q
    |||||||| |||||||||||||| |||||| || ||||| |||||||||    
T  29577509 aagagaaatgatatttgtacaactatttttgtacaatttttgtacaact 29577461  T

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