View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3300_low_22 (Length: 238)
Name: NF3300_low_22
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_22 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 10043665 - 10043444
Alignment:
| Q |
16 |
atgttgtggtacacaacatatatcattcactttgaaaatcagtgaatagatcgttcatgtttaaatcacatggaaatatatttattggctttttaattgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10043665 |
atgttgtggtacacaacatatatcattcactttgaaaatcagtgaataggtcgt-catgtttaaatcacatggaaatatatttattggctttttaattgg |
10043567 |
T |
|
| Q |
116 |
tatattcaaatctcttactatgctgcagaaatgtgaatatttttacttttggtttctgtgtagaattgtgaataaataataattgtgttaccgtctatat |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10043566 |
tatattcaattctcttactatgctgcagaaatgtgaatatttttacttttggattctgtgtagaattgtgaataaataataattgtgttactgtctatat |
10043467 |
T |
|
| Q |
216 |
tattatataagcactttgtttct |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10043466 |
tattatataagcactttgtttct |
10043444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 2039895 - 2039728
Alignment:
| Q |
16 |
atgttgtggtacacaacatatatcattcactttgaaaatcagtgaatagatcgttcatgtttaaatcacatggaaatatatttattggctttttaattgg |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| ||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2039895 |
atgttgtgatacacaacatatgtcattcactttgaaaatcaatgattaggtcaatcaggtttaaatcacatggaaatatatttattggctttttaattgg |
2039796 |
T |
|
| Q |
116 |
tatattcaaatctcttactatgctgcagaaatgtgaatatttttacttttggtttctgtgtagaattgtg |
185 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
2039795 |
catattcaaa--tcttagtattatgcagaaatgtgaatacttttacttttagtttctgtgtataattgtg |
2039728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 1361605 - 1361653
Alignment:
| Q |
128 |
tcttactatgctgcagaaatgtgaatatttttacttttggtttctgtgt |
176 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1361605 |
tcttactattatgcagaaatgtgaatatttttacttttggtttttgtgt |
1361653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 37318232 - 37318193
Alignment:
| Q |
139 |
tgcagaaatgtgaatatttttacttttggtttctgtgtag |
178 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
37318232 |
tgcagaaatatgaatatttttacttttggtttcggtgtag |
37318193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University