View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_low_24 (Length: 235)
Name: NF3300_low_24
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 9170409 - 9170199
Alignment:
| Q |
11 |
cacagaaatctcaaaacacttatttgaaaaacttgatgttcttctccaaaatacaacacaaactggcttaaaaactcaagcaaaacccattatttgcttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9170409 |
cacagaaatctcaaaacacttatttgaaaaacttgatgttcttctccaaaatacaacacaaactggcttaaaaactcaagcaaaacccattatttgcttc |
9170310 |
T |
|
| Q |
111 |
gaatttttgaccctcgtgaagcaga-nnnnnnnncatgcttgtttacctttaatgtagcttcaacgccattaatgggttccttaaaatgggtcttcatgt |
209 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9170309 |
gaatttttgaccctcgtgaaacagatttttttttcatgcttgtttacctttaatgtagcttcaacgccattaatgggttccttaaaatgggtcttcatgt |
9170210 |
T |
|
| Q |
210 |
tatgtggtttt |
220 |
Q |
| |
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||||||||||| |
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| T |
9170209 |
tatgtggtttt |
9170199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 45395678 - 45395468
Alignment:
| Q |
11 |
cacagaaatctcaaaacacttatttgaaaaacttgatgttcttctccaaaatacaacacaaactggcttaaaaactcaagcaaaacccattatttgcttc |
110 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
45395678 |
cacaaaaatctcaaaacactgatttaaaaaacttgatgttcttctccaaaatacaacactaattggcttaaaaactcaagcaaaacccattatttgcttc |
45395579 |
T |
|
| Q |
111 |
gaatttttgaccctcgtgaagcaga-nnnnnnnncatgcttgtttacctttaatgtagcttcaacgccattaatgggttccttaaaatgggtcttcatgt |
209 |
Q |
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||||||| ||| ||||| | |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45395578 |
aaattttttaccatcgtgcaacagatttttttttcatacttgtttacctttaatgtagcttcaacaccattaatgggttccttaaaatgggtcttcatgt |
45395479 |
T |
|
| Q |
210 |
tatgtggtttt |
220 |
Q |
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| |||||||| |
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| T |
45395478 |
tcagtggtttt |
45395468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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