View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_low_26 (Length: 229)

Name: NF3300_low_26
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_low_26
NF3300_low_26
[»] chr5 (5 HSPs)
chr5 (71-184)||(22917266-22917379)
chr5 (75-184)||(13596794-13596903)
chr5 (116-184)||(1685106-1685174)
chr5 (121-184)||(39952664-39952727)
chr5 (17-47)||(22917212-22917242)
[»] chr1 (3 HSPs)
chr1 (75-183)||(29693263-29693371)
chr1 (116-184)||(52037448-52037516)
chr1 (116-186)||(13624228-13624298)
[»] chr6 (4 HSPs)
chr6 (71-185)||(22721052-22721166)
chr6 (116-174)||(2627707-2627765)
chr6 (17-48)||(22720998-22721029)
chr6 (121-183)||(8746751-8746813)
[»] chr7 (4 HSPs)
chr7 (71-184)||(25731001-25731114)
chr7 (127-184)||(33097893-33097950)
chr7 (128-184)||(25350152-25350208)
chr7 (128-184)||(25355846-25355902)
[»] chr2 (3 HSPs)
chr2 (116-173)||(44800571-44800628)
chr2 (113-174)||(25123498-25123559)
chr2 (131-184)||(15084357-15084410)
[»] chr4 (2 HSPs)
chr4 (121-184)||(1694812-1694875)
chr4 (121-174)||(36678796-36678849)
[»] chr8 (2 HSPs)
chr8 (121-183)||(24847957-24848019)
chr8 (121-183)||(28940772-28940834)
[»] scaffold0001 (1 HSPs)
scaffold0001 (121-184)||(12835-12898)
[»] chr3 (1 HSPs)
chr3 (116-174)||(42614304-42614362)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 22917266 - 22917379
Alignment:
Q  71 ctcactagactagcattagacaatgaagaaaccaaaattcttattacgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaaca 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22917266 ctcactagactagcattagacaatgaagaaaccaaaattcttattatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaaca 22917365  T
Q  171 tctcccctttagag 184  Q
    |||  |||||||||    
T  22917366 tctatcctttagag 22917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 13596794 - 13596903
Alignment:
Q  75 ctagactagcattagacaatgaagaaaccaaaattcttattacgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctc 174  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  13596794 ctagactagcattagacaatgaagaaaccaaaattcttattatgcaaccttcgttctcaaatttacgaagcatggcaatgtcgcataatttgaacatctc 13596893  T
Q  175 ccctttagag 184  Q
     |||||||||    
T  13596894 tcctttagag 13596903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 1685174 - 1685106
Alignment:
Q  116 acgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    |||| ||||||||||||||| ||||||| ||| |||||||  ||||||||||||||||| |||||||||    
T  1685174 acgcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 39952664 - 39952727
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    ||||||||||||||||||| |||||||||||||||   |||||||||||||||| || ||||||    
T  39952664 accttcgttctcaaatttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagag 39952727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 22917212 - 22917242
Alignment:
Q  17 aatatcaacttttgtaagtgtttcttggtta 47  Q
    |||||||||||||||||||||||||||||||    
T  22917212 aatatcaacttttgtaagtgtttcttggtta 22917242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 29693263 - 29693371
Alignment:
Q  75 ctagactagcattagacaatgaagaaaccaaaattcttattacgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctc 174  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29693263 ctagactagcattagacaatgaagaaaccaaaattcttattatgcaaccttcgttctcaaatttacgaagaatggcaatgtcgcgtaatttgaacatctc 29693362  T
Q  175 ccctttaga 183  Q
      |||||||    
T  29693363 ttctttaga 29693371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 52037516 - 52037448
Alignment:
Q  116 acgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    |||| ||||||||||||||| ||||||| ||| |||||||  ||||||||||||||||| |||||||||    
T  52037516 acgcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctttagag 52037448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 13624228 - 13624298
Alignment:
Q  116 acgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagagaa 186  Q
    |||| ||||||||||||||| ||||||| ||| | |||||  ||||||||||||||||| |||||||||||    
T  13624228 acgcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatttgaacatctctcctttagagaa 13624298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 22721052 - 22721166
Alignment:
Q  71 ctcactagactagcattagacaatgaagaaaccaaaattcttattacgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaaca 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||    
T  22721052 ctcactagactagcattagacaatgaagaaactaaaattcttattatgcaacctacgttctcaaattaacgaagaatggcaatgtcgcgtaatttgaaca 22721151  T
Q  171 tctcccctttagaga 185  Q
    |||| ||||||||||    
T  22721152 tctctcctttagaga 22721166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 2627765 - 2627707
Alignment:
Q  116 acgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctc 174  Q
    |||| ||||||||||||||||||||||| ||| |||||||   ||||||||||||||||    
T  2627765 acgcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctc 2627707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 22720998 - 22721029
Alignment:
Q  17 aatatcaacttttgtaagtgtttcttggttaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  22720998 aatatcaacttttgtaagtgtttcttggttaa 22721029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 8746813 - 8746751
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttaga 183  Q
    ||||| ||||||||||||||||| |||| ||||||  | ||||||||||||| | ||||||||    
T  8746813 acctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 25731001 - 25731114
Alignment:
Q  71 ctcactagactagcattagacaatgaagaaaccaaaattcttattacgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaaca 170  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  25731001 ctcactaaactagcattagacaatgaagaaaccaaaattcttattatgcaaccttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaaca 25731100  T
Q  171 tctcccctttagag 184  Q
    |||| |||||||||    
T  25731101 tctctcctttagag 25731114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 33097950 - 33097893
Alignment:
Q  127 gttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    ||||| ||||||||||| |||| ||||||  ||||||||||||||||| |||||||||    
T  33097950 gttcttaaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagag 33097893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 25350208 - 25350152
Alignment:
Q  128 ttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    |||||||||||||||| |||| ||||||  |||||||||||| | || |||||||||    
T  25350208 ttctcaaatttacgaagaatgacaatgttccgtaatttgaacctatctcctttagag 25350152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 25355902 - 25355846
Alignment:
Q  128 ttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    |||||||||||||||| |||| ||||||  |||||||||||| | || |||||||||    
T  25355902 ttctcaaatttacgaagaatgacaatgttccgtaatttgaacctatctcctttagag 25355846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 44800571 - 44800628
Alignment:
Q  116 acgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatct 173  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||    
T  44800571 acgcaaccttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatct 44800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 25123559 - 25123498
Alignment:
Q  113 attacgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctc 174  Q
    |||| ||||||||||||||||| |||||||| |||| ||||||  |||||||||||||||||    
T  25123559 attatgcaaccttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatctc 25123498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 15084410 - 15084357
Alignment:
Q  131 tcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    ||||||||||||| ||| |||||||  |||||||||||||| || |||||||||    
T  15084410 tcaaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagag 15084357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 1694812 - 1694875
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    ||||||||||||||||||||||| ||| |||||||  ||| |||||||||| || |||||||||    
T  1694812 accttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagag 1694875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 36678849 - 36678796
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctc 174  Q
    ||||||||||||||||||||||||||| |||||||   ||||||| ||||||||    
T  36678849 accttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacatctc 36678796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 24848019 - 24847957
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttaga 183  Q
    ||||||||||||||||||||||| |||| ||||||    ||||||||||||||| ||||||||    
T  24848019 accttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 28940834 - 28940772
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttaga 183  Q
    ||||| |||||||| |||||||| |||| ||||||   |||||||||||||||| ||||||||    
T  28940834 acctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttaga 28940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 12835 - 12898
Alignment:
Q  121 accttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctcccctttagag 184  Q
    ||||||||||| ||||||||||| ||||||||| |  | | ||||||||||||| |||||||||    
T  12835 accttcgttcttaaatttacgaagaatggcaatatttcctcatttgaacatctctcctttagag 12898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 42614362 - 42614304
Alignment:
Q  116 acgcaaccttcgttctcaaatttacgaaaaatggcaatgtcgcgtaatttgaacatctc 174  Q
    |||| |||||||||||||||||| |||| |||  ||||||  |||||||||||||||||    
T  42614362 acgcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatctc 42614304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University