View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3300_low_28 (Length: 227)

Name: NF3300_low_28
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3300_low_28
NF3300_low_28
[»] chr7 (12 HSPs)
chr7 (1-227)||(22879165-22879391)
chr7 (5-227)||(22892485-22892707)
chr7 (1-227)||(22813555-22813781)
chr7 (1-227)||(22896797-22897023)
chr7 (82-227)||(22887907-22888052)
chr7 (82-227)||(22803945-22804090)
chr7 (82-227)||(22829640-22829785)
chr7 (82-227)||(22870443-22870588)
chr7 (82-227)||(22808229-22808374)
chr7 (82-227)||(22874537-22874682)
chr7 (82-227)||(22838661-22838806)
chr7 (145-227)||(22912331-22912413)
[»] chr1 (1 HSPs)
chr1 (101-227)||(21151960-21152086)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22879165 - 22879391
Alignment:
Q  1 atcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggttcccaaaagttaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||    
T  22879165 atcagcaagagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaaatatttgttcccaaaagttaat 22879264  T
Q  101 ccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctg 200  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  22879265 ccagaagaagataaactaggcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacctggtctagccaaaggttctg 22879364  T
Q  201 aatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||||||||||||||||    
T  22879365 aatgtgaacacaacaaaccaagtttca 22879391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 22892485 - 22892707
Alignment:
Q  5 gcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggttcccaaaagttaatccag 104  Q
    |||||||||||||| || || |||||| | ||| ||||||| ||||||||||||||||||||||||||         ||||| |||||||||||||||||    
T  22892485 gcaatagacacagaagtctgtgacattgtgttgcccatagaggaaggataagacaaaggaaagtcctcaaaaaattcttggtacccaaaagttaatccag 22892584  T
Q  105 aataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctgaatg 204  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  22892585 aagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacatggtctagccaaaggttctgaatg 22892684  T
Q  205 tgaacacaacaaaccaagtttca 227  Q
    |||||||||||| ||||||||||    
T  22892685 tgaacacaacaatccaagtttca 22892707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22813555 - 22813781
Alignment:
Q  1 atcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggttcccaaaagttaat 100  Q
    ||||| |||||| ||||| ||||| |||||| |||||||||| ||||||||||| |||||||||||||||||         ||||| |||||||||||||    
T  22813555 atcagaaatagaaacagaagtatgtgacattgtcttgtccatggaagaaggatacgacaaaggaaagtcctcaaaatattcttggtacccaaaagttaat 22813654  T
Q  101 ccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctg 200  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  22813655 ccagaagaagataaactaagcgaaggcaaatctggcaaaggtatatcccgctccaaatactgcacaacttgtctcatacctggtctagccaaaggttctg 22813754  T
Q  201 aatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||||||||||||||||    
T  22813755 aatgtgaacacaacaaaccaagtttca 22813781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22896797 - 22897023
Alignment:
Q  1 atcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggttcccaaaagttaat 100  Q
    |||||||||||||||||| || || |||||| | ||| ||||||||||||||||||||||||||||||||||         ||||| ||||||||||||     
T  22896797 atcagcaatagacacagaggtgtgtgacattgtgttgcccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggtacccaaaagttaaa 22896896  T
Q  101 ccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctg 200  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  22896897 ccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgtctcatacctggtctagccaaaggttctg 22896996  T
Q  201 aatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||||||||||||||||    
T  22896997 aatgtgaacacaacaaaccaagtttca 22897023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22887907 - 22888052
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||||||| |||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  22887907 ttggtacccaaaagttaaaccagaagaagataaactaagcgaagaaaaatctggcaaaggtgtatccctctccaaatactgtacaacttgtctcatactt 22888006  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  22888007 ggtctagccaaaggctctgaatgtgaacacaacaagccaagtttca 22888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22803945 - 22804090
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||||||||||| |  |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  22803945 ttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaatctggtaaaggtaaatccctctccaaatactgcacaacttgtctcatactt 22804044  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  22804045 ggtctagccaaaggctctgaatgtgaacacatcaagccaagtttca 22804090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22829640 - 22829785
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||  ||| |||||| |||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |    
T  22829640 ttggtacccaaaaaataaaccagaagaagataaactaagcgaaaacaaatatggcaaaggtatatccctctccaaatactgcacaacttgtctcatacct 22829739  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  22829740 ggtctagccaaaggttctgaatgtgaacacaacaatccaagtttca 22829785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22870443 - 22870588
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||||||||||| |  |||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  22870443 ttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaagctggtaaaggtatatccctctccaaatactgcacaacttgtctcatactt 22870542  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  22870543 ggtctagccaaaggctctgaatgtgaacacatcaagccaagtttca 22870588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22808229 - 22808374
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  22808229 ttggtacccaaaagttaaaccagaagaagataaactaagcgaagacaaatctggcaaagctatatccctctccaaatactgcacaacttgtctcatactt 22808328  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    |||||| ||| ||| ||||||||  |||||||||| ||||||||||    
T  22808329 ggtctaaccagaggctctgaatgcaaacacaacaagccaagtttca 22808374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22874537 - 22874682
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||||||| ||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||    
T  22874537 ttggtacccaaaagttaaaccaaaagaagataaactaagcgaagaaaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatgctt 22874636  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||    
T  22874637 ggtctagccaaaggctctgaatgagaacacaacaatccaagtttca 22874682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 22838661 - 22838806
Alignment:
Q  82 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 181  Q
    ||||| |||||||||||| ||| ||  ||||||||||||| ||||||||||||| || ||||||||| ||||||||||| |||||||||| |||||||||    
T  22838661 ttggtacccaaaagttaaaccaaaagtagataaactaagcgaagacaaatctggaaagggtatatccgtctccaaatactgcacaacttgcctcatactt 22838760  T
Q  182 ggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||    
T  22838761 ggtctagccaaaggctctgaatgagaacacaacaatccaagtttca 22838806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 22912331 - 22912413
Alignment:
Q  145 atccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttca 227  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||  ||  |||||||||| ||||||||||||||||    
T  22912331 atccctctccaaatacctcaaaacttgtctcatacttggtctagccaaagcctcacaatgtgaacataacaaaccaagtttca 22912413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 21152086 - 21151960
Alignment:
Q  101 ccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctg 200  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |    
T  21152086 ccagaagaagataaactaagtgaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatacttggtctagccaaaggctcgg 21151987  T
Q  201 aatgtgaacacaacaaaccaagtttca 227  Q
    |||||||||||||||| ||||||||||    
T  21151986 aatgtgaacacaacaagccaagtttca 21151960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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