View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_low_6 (Length: 419)
Name: NF3300_low_6
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 33306945 - 33306559
Alignment:
| Q |
17 |
cctattcattataaataagcataagttcaatttggttaataaatcaagtatatgtaactatatttgtaacatgactaaactacaacattctttgttattt |
116 |
Q |
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| T |
33306945 |
cctattcattataaataagcataagttcaatttggttaataaatcaagtatatgtaactatctttgtaacatgactaaactacaacattctttgttattt |
33306846 |
T |
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| Q |
117 |
agatggttctattggtaaagccatccgcttcacgctggctgcctccttagccggtttgactgccgttgctgccgcctcgcattaccggcgagaaacatcc |
216 |
Q |
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| T |
33306845 |
agatggttctattggtaaagccatccgcttcacgctggctgcctccttagccggtttgactgccgtggccaccgcctcgcattaccggcgacaaacatcc |
33306746 |
T |
|
| Q |
217 |
aaggtgggagtagaccagaagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgtttt |
316 |
Q |
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| T |
33306745 |
aaggtgggagtagaccagaagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgtttt |
33306646 |
T |
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| Q |
317 |
acctttttgtgaattctcttgcaaacactgttgttggttgttatgcttcataaaaatgttgaatttagatttagatagagaattttt |
403 |
Q |
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| T |
33306645 |
acctttttgtgaattctcttgcaaacactgttgttggttgttatgcttcataaaaatgttgaatttagatttagatagagaattttt |
33306559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 33253533 - 33253455
Alignment:
| Q |
235 |
aagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgt |
313 |
Q |
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| T |
33253533 |
aagatcattcctcacgttgatagaacagaatctggtcgtttggaaaagatagaaaagttctcccactatgttggtatgt |
33253455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 33273705 - 33273627
Alignment:
| Q |
235 |
aagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgt |
313 |
Q |
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||||||||||| || || |||| || | ||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |
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| T |
33273705 |
aagatcattcctcacgttgatagaacagaatctggtcgtttggaaaagatagaaaagttctcccactatgttggtatgt |
33273627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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