View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3300_low_7 (Length: 417)
Name: NF3300_low_7
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 67 - 407
Target Start/End: Complemental strand, 9871592 - 9871251
Alignment:
| Q |
67 |
aataagcagaattgaaattttttagctacggattttctttgtaccttgatattttgatacacatcttgtctcaaaacagccattgttggccctattttat |
166 |
Q |
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| T |
9871592 |
aataagctgaattgaaattttttagctacggattttctttgtaccttgatattttgatacacatcttgtctcaaaacagccattgttggccctattttat |
9871493 |
T |
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| Q |
167 |
ctgtaattattagacacatatttaataaacaatgtgttaatatagatgttactcacatcaaaatttgaacaataataatgaaattaagattt-aaattaa |
265 |
Q |
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| T |
9871492 |
ctgtaattattagacacatatttaataaacaatgtgttaatatagatgttactcacatcaaaatttgaacaataataatgaaattaagatttgaagtaaa |
9871393 |
T |
|
| Q |
266 |
gaaaatataccaagaacttgtagaaccaaataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaacta |
365 |
Q |
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| T |
9871392 |
gaaaacataccaagaacttgtagaaccaaataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaacta |
9871293 |
T |
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| Q |
366 |
tcacaatcatagaaagctcttcaataaaacaacttatctctg |
407 |
Q |
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| T |
9871292 |
tcacaatcatagaaagctcttcaataaaacaacttatctctg |
9871251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 9877204 - 9877121
Alignment:
| Q |
87 |
tttagctacggattttctttgtaccttgatattttgatacacatcttgtctcaaaacagccattgttggccctattttatctgt |
170 |
Q |
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| T |
9877204 |
tttagctatggattttctttgtaccttgatattttggtacacatcttgtctcaaaacagccattgttgggccaattttttctgt |
9877121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 407
Target Start/End: Complemental strand, 9877031 - 9876897
Alignment:
| Q |
273 |
taccaagaacttgtagaaccaaataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaactatcacaat |
372 |
Q |
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|||||||||| || ||||| |||||||||||||||| ||||||||| | || || |||||||||||| | |||||| ||| ||||||||||| || | |
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| T |
9877031 |
taccaagaacatgcagaactgaataacatatagagagaaaaggcttagtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccac |
9876932 |
T |
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| Q |
373 |
catagaaagctcttcaataaaacaacttatctctg |
407 |
Q |
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| T |
9876931 |
catagaaagttcttcaataaaacaacttatctctg |
9876897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 9871647 - 9871619
Alignment:
| Q |
16 |
ggtggtagtataatcaagtaattatgttt |
44 |
Q |
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| T |
9871647 |
ggtggtagtataatcaagtaattatgttt |
9871619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 41036887 - 41036926
Alignment:
| Q |
130 |
tcttgtctcaaaacagccattgttggccctattttatctg |
169 |
Q |
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| T |
41036887 |
tcttgtctcaaaacagccattgttggccctaccttatctg |
41036926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 41037018 - 41037062
Alignment:
| Q |
274 |
accaagaacttgtagaaccaaataacatatagagaggaaaggctt |
318 |
Q |
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| T |
41037018 |
accaagaacttgtagaaccatgtaacataaagataggaaaggctt |
41037062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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