View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3300_low_9 (Length: 411)
Name: NF3300_low_9
Description: NF3300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3300_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 31329893 - 31330277
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31329893 |
ccaaaggtgtggagatttctgggattttctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
31329992 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31329993 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
31330092 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31330093 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatatttttttgataaattaatgcatataacaccagatgcatatagtctcatttca |
31330192 |
T |
|
| Q |
319 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatatattcttc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31330193 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatattttcttc |
31330277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 31378675 - 31379059
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378675 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
31378774 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378775 |
tgttcaagataattctctatactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
31378874 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378875 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataagttaatgcatataacaccagatgcatatagtctcatttca |
31378974 |
T |
|
| Q |
319 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatatattcttc |
403 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31378975 |
tgtgcatcctttgctgtcacggtgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatattttcttc |
31379059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 31313215 - 31313599
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
31313215 |
ccaaaggtgtggagatttgtgggatttgctgctgttgttgctggactgctctgcaatgctctaagttcttccttcaactatctatttggaggatggacca |
31313314 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
31313315 |
tgttggtgataactctttacactgttttcagtttcatcctttgcgtgttagttttatttgccgcaaggatttggcaacacccaagaagtcattggttcgt |
31313414 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| || |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
31313415 |
agctcatacaacatttgttgtattggcaatcacgtcactgtattcatatttttttgataaattaatggataatacaccagatgcatatagtctcatttca |
31313514 |
T |
|
| Q |
319 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatatattcttc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31313515 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaattcaatgcggatttgaaatcgatcttctatattttcttc |
31313599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 31362968 - 31363338
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
31362968 |
ccaaaggtgtggagatttgtgggatttgctgctgttgttgctggactgctctgcaatgctctaagttcttccttcaactatctctttggaggatggacca |
31363067 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||| | |||| |||||| |||||||| | |||||||||||||||||||||||||| || |||| |
|
|
| T |
31363068 |
tgttggtgatagctctttacactgttttcagtttcgccctttgcgtgttagttttatttcc---aaggatatggcaacactcaagaagtcatttgttcat |
31363164 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
||| ||||||||| ||||||||||||||| || || || ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31363165 |
agctaatacaacatttgttgtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatagtctcatttca |
31363264 |
T |
|
| Q |
319 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttct |
392 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31363265 |
tgtgcatcctttgctgtctcagcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttct |
31363338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 31279607 - 31279240
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
||||| |||||||||||| | || |||||| ||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31279607 |
ccaaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaatt |
31279508 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
| || ||||| | |||||| |||||||||||||||||| | || | |||||||| | || ||||||| |||||||||||||| | | ||| | |
|
|
| T |
31279507 |
tcttgaagattttcctttacggcgttttcagcttcatcattagcttggtcgttttattt---gtaaatatatggcgacactcaagaagtcttcgattcaa |
31279411 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
||| || ||| ||||| | |||||| |||| || ||||||||||||| ||| ||||||||||| ||| || | ||| |||| |||||| ||||||||| |
|
|
| T |
31279410 |
agcacacacagcatatttggtattgacaatgacctcgctatattcatttttcttcgataaattgatgaatgggaaacctgatggatatagcctcatttca |
31279311 |
T |
|
| Q |
319 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttct |
392 |
Q |
| |
|
||||| ||||||||| ||| | | |||||||||||| || ||||||| |||||||||||| | |||||||| |
|
|
| T |
31279310 |
tgtgcttcctttgctatcatgtcacttagtttgtcgcgg---caaactcagtgcggatttgaagttgatcttct |
31279240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 40843444 - 40843303
Alignment:
| Q |
20 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
119 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||| |||||||||| |||| ||||||| || ||||||||||||||||| |||||| |||||||||| |
|
|
| T |
40843444 |
caaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaattt |
40843345 |
T |
|
| Q |
120 |
gttcaagataattctttacactgttttcagcttcatcatttg |
161 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40843344 |
gttgaagataattctttacactgttttcagtttcatcatttg |
40843303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 31476062 - 31475921
Alignment:
| Q |
20 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
119 |
Q |
| |
|
||||||| ||||||||| |||| |||||| |||||| ||||||||||||||| ||||||| || |||||||| |||||||| |||||| | |||||||| |
|
|
| T |
31476062 |
caaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaattt |
31475963 |
T |
|
| Q |
120 |
gttcaagataattctttacactgttttcagcttcatcatttg |
161 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31475962 |
gttgaagataattctttacactgttttcagtttcatcatttg |
31475921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 31644002 - 31643635
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||| ||||||||| |||| |||||| || || |||||||||| ||||| ||||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
31644002 |
ccaaaggtatggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatc |
31643903 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
|||| ||||| | ||||||| |||||||| |||||||| | | | ||||||||| |||| || ||||||| |||||||||| | | ||| | |
|
|
| T |
31643902 |
tgttgaagattttcctttacagcgttttcagtttcatcatcagcctcatgattttattt---gcaaaaatgtggcaaccctcaagaagtattcgattcaa |
31643806 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
||| || ||| ||||| | ||||| ||||||| ||| ||||||||| ||| || |||||| | || || || ||||||||||||||| |||||||| |
|
|
| T |
31643805 |
agcacacacagcatatttggtattaacaatcacttcgttatattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcctcatttct |
31643706 |
T |
|
| Q |
319 |
tgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttct |
392 |
Q |
| |
|
||||| ||||||||| ||| | | ||||||||||||| | ||||| | |||||||||||| |||||||||| |
|
|
| T |
31643705 |
tgtgcttcctttgctatcatgtcacttagtttgtcgacg---caaactgagtgcggatttgaattcgatcttct |
31643635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 31407534 - 31407396
Alignment:
| Q |
20 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
119 |
Q |
| |
|
|||| |||||||||||| |||| |||||| |||||| ||||||| |||| || |||||||||| ||||||||||| |||| |||||| |||||||||| |
|
|
| T |
31407534 |
caaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgttatgctctcagcacttccttcaaccatctatttggaaattggaattt |
31407435 |
T |
|
| Q |
120 |
gttcaagataattctttacactgttttcagcttcatcat |
158 |
Q |
| |
|
||| |||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
31407434 |
gttgaagatatttctttacactcttttcagtttcatcat |
31407396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 31284686 - 31284994
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
||||| |||||||||||| |||| |||||| || ||| | ||||||||||||| ||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
31284686 |
ccaaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatc |
31284785 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttcca |
218 |
Q |
| |
|
|| | |||||||| || |||| |||||||||||||||| | || | |||| ||| |||||||| |||||| |||| ||||||| | ||||| | |
|
|
| T |
31284786 |
tgctgaagataatcctctacagcattttcagcttcatcatcagcttggtggttttgttt---gcaaggatgtggcaaaactcgagaagtcttcggttcaa |
31284882 |
T |
|
| Q |
219 |
agcgcatacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttca |
318 |
Q |
| |
|
||| ||| | | | | | |||||| ||||||| || ||||||||| ||| || |||||| || | || || ||||||||||||||| ||||||||| |
|
|
| T |
31284883 |
agctcatgctgcgtttttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctcatttca |
31284982 |
T |
|
| Q |
319 |
tgtgcatccttt |
330 |
Q |
| |
|
||||| |||||| |
|
|
| T |
31284983 |
tgtgcttccttt |
31284994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 31332168 - 31332307
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||| | || |||||| || ||||||||||||||||||| ||||| | || |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31332168 |
ccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaatt |
31332267 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcat |
158 |
Q |
| |
|
|||| || ||| |||| |||| || |||||| |||||||| |
|
|
| T |
31332268 |
tgttgaaaatatttctctacagtgctttcagtttcatcat |
31332307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 31380953 - 31381092
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||| | || |||||| || ||||||||||||||||||| ||||| | || ||||||||||| || ||||||||||| ||||||| |
|
|
| T |
31380953 |
ccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaatt |
31381052 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcat |
158 |
Q |
| |
|
|||| || ||| |||| |||| || |||||| |||||||| |
|
|
| T |
31381053 |
tgttgaaaatatttctctacagtgctttcagtttcatcat |
31381092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 333
Target Start/End: Original strand, 31281426 - 31281712
Alignment:
| Q |
43 |
tttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctttacactg |
142 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| ||||| | || ||||||||||| |||||||||||||||||||||||||| ||||| | |||||| | |
|
|
| T |
31281426 |
tttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgttgaagattttcctttacggcg |
31281525 |
T |
|
| Q |
143 |
ttttcagcttcatcatttgtgtgttaattttatttgccgcaaggatatggcaacactcaagaagtcgttggttccaagcgcatacaacatatgttgtatt |
242 |
Q |
| |
|
||||||||||||||||| | || | |||||||| |||| ||||||| |||||||||||||| | | ||| |||| || | ||||| | ||||| |
|
|
| T |
31281526 |
ttttcagcttcatcattagcttggtcgttttattt---gcaaatatatggcgacactcaagaagtcttcgcttcaaagcacactcggcatat-tggtatt |
31281621 |
T |
|
| Q |
243 |
ggcaatcacgtcgctatattcatattttttcgataaattaatgcatataacaccagatgcatatagtctcatttcatgtgcatcctttgct |
333 |
Q |
| |
|
||||||| ||||| ||||| | ||| || |||||| | ||| || || |||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
31281622 |
aacaatcacttcgctgtattcctttttctttgataaagtgatgaatggaaaaccagatgcatacagtctaatttcatgtgccgcctttgct |
31281712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 31317327 - 31317487
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || || |||||||||| ||||| |||| | || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
31317327 |
ccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaatt |
31317426 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgc |
179 |
Q |
| |
|
|||| || ||| ||||||||| | |||||| |||||||| || || | ||||||||||| |
|
|
| T |
31317427 |
tgttgaaaatatttctttacagcgctttcagtttcatcatctgcttggtgattttatttgc |
31317487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 31368541 - 31368701
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || || |||||||||| ||||| ||||| | || |||||||| ||||||||||||||||| || |||| |
|
|
| T |
31368541 |
ccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaatt |
31368640 |
T |
|
| Q |
119 |
tgttcaagataattctttacactgttttcagcttcatcatttgtgtgttaattttatttgc |
179 |
Q |
| |
|
|||| || ||| ||||||||| | | |||| |||||||| || || | ||||||||||| |
|
|
| T |
31368641 |
tgttgaaaatatttctttacagcgctgtcagtttcatcatctgcttggtgattttatttgc |
31368701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 31395729 - 31395867
Alignment:
| Q |
20 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
119 |
Q |
| |
|
||||||| ||||||||| | |||| |||| |||||||||||||||| |||| |||||||||| ||||||||||| |||| |||||| | |||| || |
|
|
| T |
31395729 |
caaaggtatggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttccttcaatcatctatttggaaactggagatt |
31395828 |
T |
|
| Q |
120 |
gttcaagataattctttacactgttttcagcttcatcat |
158 |
Q |
| |
|
|| |||||| |||||||||| |||||||| |||||||| |
|
|
| T |
31395829 |
gtggaagatagttctttacacagttttcagtttcatcat |
31395867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 31416667 - 31416529
Alignment:
| Q |
20 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
119 |
Q |
| |
|
|||| |||||||||||| | || |||| | | |||| |||||||||| |||| ||||||| || ||||| |||||| |||| |||||| |||||||||| |
|
|
| T |
31416667 |
caaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgttatgctctaagctcttctttcaaccatctatttggaaattggaattt |
31416568 |
T |
|
| Q |
120 |
gttcaagataattctttacactgttttcagcttcatcat |
158 |
Q |
| |
|
||| ||| |||||||||| ||| ||| ||| |||||||| |
|
|
| T |
31416567 |
gttgaaggtaattctttatactctttccagtttcatcat |
31416529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 31505987 - 31505876
Alignment:
| Q |
50 |
cagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctttacactgttttcag |
149 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||| | | |||| |||||| ||||||||| ||| |||||| | |||||| ||||||| | |
|
|
| T |
31505987 |
cagctgttgttggattgctttgttatgctctcagttcttcctttatccatctatttggaaattggaattggttgaagatattcctttacggtgttttctg |
31505888 |
T |
|
| Q |
150 |
cttcatcatttg |
161 |
Q |
| |
|
|||||||||| |
|
|
| T |
31505887 |
tctcatcatttg |
31505876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 31463075 - 31462998
Alignment:
| Q |
85 |
tcttccttcaactatctctttggagattggaatttgttcaagataattctttacactgttttcagcttcatcatttgt |
162 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||| ||||| ||||| ||||| |||||||||||||| ||||| |||||| |
|
|
| T |
31463075 |
tcttccttcaaccatctatttggaaattggaacttgttgaagattattctctacactgttttcagtttcattatttgt |
31462998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 31494244 - 31494128
Alignment:
| Q |
20 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
119 |
Q |
| |
|
|||| |||||||||||| | | |||| | |||||||| ||||| ||||||| ||||||| || ||||| |||||| |||| |||||| |||||||||| |
|
|
| T |
31494244 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgttcaaccatctatttggaaattggaattt |
31494145 |
T |
|
| Q |
120 |
gttcaagataattcttt |
136 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
31494144 |
gttgaaggtaattcttt |
31494128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 31390896 - 31390809
Alignment:
| Q |
74 |
atgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctttacactgttttcagcttcatcatttg |
161 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| | ||||| ||||| ||||| |||| |||||||||||||| ||||| ||||| |
|
|
| T |
31390896 |
atgctctaagttcttccttcaaccatctatttggaaactggaacttgttaaagatttttctgtacactgttttcagtttcattatttg |
31390809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 31288455 - 31288564
Alignment:
| Q |
19 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
118 |
Q |
| |
|
||||| |||||||||||| | || |||||| ||||||||||||||||||| | ||| ||| | ||||||||||| ||||||| |||||| |||||| |
|
|
| T |
31288455 |
ccaaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaatc |
31288554 |
T |
|
| Q |
119 |
tgttcaagat |
128 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31288555 |
tgttgaagat |
31288564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 31505746 - 31505686
Alignment:
| Q |
294 |
accagatgcatatagtctcatttcatgtgcatcctttgctgtcacggcgcttagtttgtcg |
354 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||| ||| | |||| ||||||||| |
|
|
| T |
31505746 |
accagatgcatatagcctcatttcaagtgcttcctttgctatcatgtcgctcagtttgtcg |
31505686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 31483739 - 31483782
Alignment:
| Q |
112 |
tggaatttgttcaagataattctttacactgttttcagcttcat |
155 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
31483739 |
tggagtttgttgaagataattctttacactgttttcagtttcat |
31483782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 31493982 - 31493889
Alignment:
| Q |
294 |
accagatgcatatagtctcatttcatgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatctt |
390 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||||||| ||| | ||||||| |||||||| | ||| ||| |||||||||||| |||||||| |
|
|
| T |
31493982 |
accagatgcatatagtctaataacatgtgctgcctttgctatcatgtcgcttagcttgtcgag---ccaaattcagtgcggatttgaagtcgatctt |
31493889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 31317599 - 31317694
Alignment:
| Q |
294 |
accagatgcatatagtctcatttcatgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttct |
392 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||||||| | | | | ||||||||||| ||| ||||||| || ||||||||||| |||||||| |
|
|
| T |
31317599 |
accagatgcatatagtttaatttcatgtgctgcctttgctattatgtcacttagtttgtcaagg---caaactcagtggggatttgaaattgatcttct |
31317694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 25708415 - 25708531
Alignment:
| Q |
28 |
tggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaaga |
127 |
Q |
| |
|
||||||||| | || |||||| ||||| |||||||||| | || |||||||||| ||||| || || ||||| ||||| || ||||| |||| |||| |
|
|
| T |
25708415 |
tggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaattatctgtttggtgagtggaacttgtcaaaga |
25708514 |
T |
|
| Q |
128 |
taattctttacactgtt |
144 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
25708515 |
taattctttacagtgtt |
25708531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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