View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_13 (Length: 256)
Name: NF3301_high_13
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 3805141 - 3805002
Alignment:
| Q |
99 |
ttacacaccattttcatttgagcgagaatcggtgctgtttgtttcatcttcaagcgagctgttctggtattgtgtttctacatttgatggtattgtggta |
198 |
Q |
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| T |
3805141 |
ttacacaccattttcatttgagcaagaatcggtgctgtttgtttcatcttcaagagaaaaattctggtactgtgtttctacatttgatggtattgtggta |
3805042 |
T |
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| Q |
199 |
tcattatcagaaattgaatgttcatccgtaaaagtgaaag |
238 |
Q |
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| T |
3805041 |
tcattatcagaaattgaatgttcatgcgtaaaagtgaaag |
3805002 |
T |
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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 5164866 - 5164937
Alignment:
| Q |
168 |
ttgtgtttctacatttgatggtattgtggtatcattatcagaaattgaatgttcatccgtaaaagtgaaagg |
239 |
Q |
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| T |
5164866 |
ttgtgtttctacatttgatggtattgtggtatcattatcagaaattgaatgttcatgtgtaaaagtgaaagg |
5164937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 31742347 - 31742418
Alignment:
| Q |
168 |
ttgtgtttctacatttgatggtattgtggtatcattatcagaaattgaatgttcatccgtaaaagtgaaagg |
239 |
Q |
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| T |
31742347 |
ttgtgtttctacatttgatggtattgttgtatcattatcagaaattgaatgttcatgtgtaaaagtgaaagg |
31742418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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