View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_15 (Length: 252)
Name: NF3301_high_15
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 59 - 239
Target Start/End: Original strand, 31241764 - 31241946
Alignment:
| Q |
59 |
gcttgtgtattgcttttaacctgttattttttaacccttgtatatcacatcacaatgttcatat--taattgagttatgttaaaacgatgattttatatg |
156 |
Q |
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| T |
31241764 |
gcttgtgtattgcttttaacctgttattttttaacccttgtatatcacatcacaatgttcatatattaattgagttatgttaaaacgatgattttatatg |
31241863 |
T |
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| Q |
157 |
catattaagtattgtttttaaacaataggtacatatttcaatcaatatttgaaatggtagatataagtatgacatttttcttc |
239 |
Q |
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| T |
31241864 |
catattaagtattgtttttaaacaataggtacatatttcaatcaatatttgaaatggtagatataagtatgacatttttcttc |
31241946 |
T |
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